Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  387 bits (994), Expect = e-112
 Identities = 215/440 (48%), Positives = 285/440 (64%), Gaps = 17/440 (3%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M+FA+LGL E L+ A+E  GY  PTPVQ +AIPAVL GRDLM AAQTGTGKT GFA+P+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           + L   G      +      R L+L PTRELA QVH S   YA++L   +  ++GGV +N
Sbjct: 61  QLLTMEG-----PKVAANSARALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSIN 115

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+  + +GVD+LVA PGRL+DL  Q ++ L+ ++ LVLDEADRMLD+GF  ++  +   
Sbjct: 116 PQMMKLRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRM 175

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
           LP KRQ LLFSATFS DI  LAG++L++P  IEV+P N     ++Q V  +    K  L 
Sbjct: 176 LPKKRQTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELF 235

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
            HL+  G W+QVLVF +T++G + L + L   G+ A  IHG+K Q  R +AL  FK+ EV
Sbjct: 236 VHLMRKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEV 295

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           +ILVATD+AARGLDI+ LP VVNF+LP V EDY+HRIGRTGRAG +GEAISLV  DE  +
Sbjct: 296 QILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNM 355

Query: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPD-VRNPRNARGPRGDGPNGSGGGG 419
           L +IE +T+Q +       F+    E   P+       V+ P+  + P+      S GGG
Sbjct: 356 LSAIEMLTRQTLTRHMEQDFEP---EHRVPDTDASGQVVKKPKKPKKPK------SSGGG 406

Query: 420 GRKDKGK--DKGKEKSASNS 437
           G+++ GK  D G+   A  S
Sbjct: 407 GKRNLGKWVDSGEVAPAEPS 426