Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 601 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  469 bits (1206), Expect = e-136
 Identities = 272/585 (46%), Positives = 343/585 (58%), Gaps = 39/585 (6%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M+F  L L+ A++ A+   GY  PTP+Q +AIPAVL G DL+  AQTGTGKT  F LP+L
Sbjct: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPML 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
            +L  +     + + G    R LVLTPTRELAAQV ES + Y + L+  S  IFGGVGMN
Sbjct: 61  HKLSMSR--SATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMN 118

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+  + +GVD+LVA PGRLLDL  QG +DLS V++L+LDEADRMLDMGF+HDVKK+LA 
Sbjct: 119 PQISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILAL 178

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
           +P ++Q+LLFSATFS DI DLA  LL NP+ I+VTP NTTV+RI Q +  +    K+ALL
Sbjct: 179 VPKEKQSLLFSATFSDDIRDLASTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALL 238

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
           AH+I    W QVLVFTRTK GAN +AE+L K+G+ A+A+HGNKSQ+ART+ALA FK+G++
Sbjct: 239 AHIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDI 298

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R LVATDIAARG+DID+LPHVVN+E+PNV EDYVHRIGRTGRAG SGEA+S V  DEE  
Sbjct: 299 RALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGF 358

Query: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDV---------------------- 398
           ++ IER TKQ I    + GF     E  +P    R  +                      
Sbjct: 359 MQEIERFTKQTIPVQIVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAART 418

Query: 399 ----RNPRNARGPRGDGPNGSGGGGGRKDKGKDKGKEKSASNSNGRGERPAREQKPREGT 454
               R   N  G  G    G G GGG++  G   G +   +N  G+G+          G 
Sbjct: 419 EMLQRIRENKAGQGGGNGGGGGNGGGQRRGGGQGGGQGRGANGGGQGQGQGPRGPGGGGA 478

Query: 455 PAREQQRP-APRAAADRAPDEFLDDDIDNFGNRVDYVPQQKPAQGRGRRPGAPAQGAAAG 513
            A + + P  P  A   AP +      D    R            +     A A G  AG
Sbjct: 479 RAPQGRGPQGPARAPHHAPHQQAHQPHDERQPRHHGNSHSPTQANQVAHLRAEAVGGGAG 538

Query: 514 AP----------RSGQPQGRQNGPRNSNGSSTGTPPAKRSGPRNG 548
            P            G+ +GR  G     G    +    RSG   G
Sbjct: 539 QPDPLRTSVDHMGGGRGRGRPGGGGGGYGGGNRSGGGGRSGGGGG 583