Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

 Score =  377 bits (969), Expect = e-109
 Identities = 230/552 (41%), Positives = 314/552 (56%), Gaps = 75/552 (13%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F  LGLSE ++ A+ A  Y +PTP+QQ+AIP +L+GRDL   AQTGTGKT  FALP L
Sbjct: 1   MHFNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           +    N  P        +  R+LVL+PTRELAAQ+ +SF+ Y R L+     +FGGV +N
Sbjct: 61  DYFARNPKPTPI-----KGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVN 115

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
            Q++A+S GVD++VA PGRLLDL  Q +  +   EI VLDEAD+M+DMGF+H +K++   
Sbjct: 116 KQIRALSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKL 175

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
           LP  RQNL FSAT  K+I  LAG+ L++P ++ V P +TT ER+ Q++  +  + K+ALL
Sbjct: 176 LPRDRQNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALL 235

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
             ++     ++ L+FTRTKHGA+R+  +L+  G+ A AIHGNKSQ  RT AL  F+ G  
Sbjct: 236 HIVLKTEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHC 295

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           ++LVATDIAARG+D+  + HV+NFE+PNV E YVHRIGRT RAG  G AIS VA DE   
Sbjct: 296 KLLVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPY 355

Query: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGSGGGGG 420
           LK+IER TK K    +++    + +EA    VR  P                        
Sbjct: 356 LKAIERATKVK---PEIVPLPENFLEA----VRNLP------------------------ 384

Query: 421 RKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPAREQQRPAPRAAADRAPDEFLDDDI 480
                      K A    G  + PA++ K  EG    ++ + A R A D+A         
Sbjct: 385 -----------KPAPQRRGPSQSPAQQAKRAEGQRRYQEGQKAQRGAPDKA--------- 424

Query: 481 DNFGNRVDYVPQQKPAQGRGRRPGA-PAQGAAAGAPRSGQPQGRQNGPRNSNGSSTGTPP 539
                        +  +G  R  GA   +G  AGA ++ +   R+ G     G + GT  
Sbjct: 425 -------------RRGEGGHRGEGAHRGEGDGAGAKKNFR---RRRGGGGGGGGAVGT-- 466

Query: 540 AKRSGPRNGAPR 551
            K +  R GAPR
Sbjct: 467 HKGAVQRTGAPR 478