Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  913 bits (2360), Expect = 0.0
 Identities = 481/634 (75%), Positives = 515/634 (81%), Gaps = 24/634 (3%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSFASLGLSEALV AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           ERLFP GHPDKSQRHGPRQPRVLVLTPTRELAAQVH+SFKVYARDL  VSACIFGGVGMN
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+QA+++GVDVLVACPGRLLDLAGQG VDL+HVEILVLDEADRMLDMGF+HDVKKVLAR
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
           LPAKRQNLLFSATFSKDITDLA KLLHNPERIEVTPPNTTVERIEQRV+RLPASHKRALL
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
           AHLIT GAWEQVLVFTRTKHGANRLAEYL+K GL A AIHGNKSQNARTKALADFKA  V
Sbjct: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARGLDIDQLPHVVNFELPNV+EDYVHRIGRTGRAGRSGEAISLVAPDEEKL
Sbjct: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGSGGGGG 420
           LKSIER+TKQ+IADGDLMGFDAS +EAEKPE RERP   N R  R  +  G  G    GG
Sbjct: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQ-NNGRGGRNQQARGEGGKDTNGG 419

Query: 421 RKDKGKDKGKEKSAS-------NSNGRGERPAREQKPREGTPAREQQRPAPRAAADRAPD 473
           RKDKGKDKGK +  +         +G  ++P R+ + ++  P +      P+  ADR P+
Sbjct: 420 RKDKGKDKGKARQQAAAKPDDKEKSGDKQQP-RKPRDKKSRPQQASNNSVPKPPADRDPE 478

Query: 474 EFLDDDIDNFGNRVDYV-PQQKPAQGRGRRPGAPAQGAAAG----APRSGQPQGRQNGPR 528
           EFLDD++DNFGNR DYV P Q   QGR RRPG   QG   G    +   GQ Q R  G  
Sbjct: 479 EFLDDELDNFGNRADYVSPYQGKNQGRNRRPGGAGQGQGQGNGQRSNAGGQGQARNGGQP 538

Query: 529 NSNGSSTGTPPAKRSGPRNGAPRDGQARRDDTRPRRPAREDQPRQEPAVQNPR--SNQPK 586
            S G     P A   G   GA RDG   R      RPAR+D  RQEPAV+NPR    QP 
Sbjct: 539 RSGGGEKRPPRANNGG---GARRDGGGGRG-----RPARDDAARQEPAVRNPRQPEKQPV 590

Query: 587 IMHKESKADRFPTPEQLDQLPSRPRGEKPALLTR 620
           I+ KESK DRFPTPEQLD LPSRPRGE+PALLTR
Sbjct: 591 IIRKESKLDRFPTPEQLDDLPSRPRGERPALLTR 624