Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 380 a.a., RNA helicase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  339 bits (870), Expect = 1e-97
 Identities = 189/390 (48%), Positives = 258/390 (66%), Gaps = 20/390 (5%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F+ LGLS  L+ AIEA  Y QP P+QQ+AIPA+LQG+D++  AQTG+GKT  F LP+L
Sbjct: 1   MPFSKLGLSAPLLKAIEAQLYEQPYPIQQQAIPAILQGKDVLGIAQTGSGKTASFVLPML 60

Query: 61  ERLFPNGHPDKSQRHGPRQPR---VLVLTPTRELAAQVHESFKVYARDL--KFVSACIFG 115
           E+L         QR  P + R    L+L PTRELA QV+E FK +   L  +  +  ++G
Sbjct: 61  EKL---------QRTAPSRNRFVEALILVPTRELAVQVNEVFKTFGAALPRRVKTLAVYG 111

Query: 116 GVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVK 175
           GV +NPQ+  +S G DVLVA PGRLLDL    +V LS V+ LVLDEAD+ML++GF  ++ 
Sbjct: 112 GVSINPQMLQLS-GTDVLVATPGRLLDLIESRAVHLSEVKTLVLDEADKMLNLGFKEEMD 170

Query: 176 KVLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASH 235
           ++LA LP KRQN+LFSAT   D+  +   LLH+P  I V   +T+ E+I Q  +++    
Sbjct: 171 RILALLPPKRQNILFSATLGGDVQAVQETLLHSPVTIAVETESTSPEQIAQVAYQVAPEK 230

Query: 236 KRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADF 295
           K   L +LI   + +QVLVF      A+ L + L+K+G+ A A+H  KSQ ART AL  F
Sbjct: 231 KGPFLRYLIKHHSLQQVLVFVSATRTADNLVDKLNKNGIEAAAMHSKKSQGARTDALTKF 290

Query: 296 KAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAP 355
           KAG++R+LVATD+A+RG+DI  LPHV+N++LP   +DYVHRIGRTGRAG +GEAISL+ P
Sbjct: 291 KAGKLRVLVATDLASRGIDIQLLPHVINYDLPRSPKDYVHRIGRTGRAGATGEAISLITP 350

Query: 356 DEEKLLKSIERMTKQKI-----ADGDLMGF 380
           ++    K I++   +++      D DL GF
Sbjct: 351 EDAHHFKIIQKKMGKQVPVEATEDIDLKGF 380