Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 563 a.a., ATP-dependent helicase from Magnetospirillum magneticum AMB-1

 Score =  328 bits (841), Expect = 4e-94
 Identities = 210/570 (36%), Positives = 292/570 (51%), Gaps = 80/570 (14%)

Query: 2   SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           +F  LGL   ++ A+  +GYT PTP+Q +AIP VL GRD++  AQTGTGKT  F LP++E
Sbjct: 19  TFEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIE 78

Query: 62  RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNP 121
            L        + R   R PR L+L PTRELAAQV E+F  Y +      A I GG  M+ 
Sbjct: 79  IL-------AAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSD 131

Query: 122 QVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
           QV  + RGVDVL+A PGRLLD+  +G + L+ V++LV+DEADRMLDMGF+ DV+K++  L
Sbjct: 132 QVALLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLL 191

Query: 182 PAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLA 241
           P  RQ L FSAT   +I  LA   L NP+ ++V+   +    + Q +  +    KR  L 
Sbjct: 192 PKIRQTLFFSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQALAVVEEIDKRETLR 251

Query: 242 HLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVR 301
           HLI     +   +F   K   + L   L KHG   V +HG+ +Q+AR + L  FK GE R
Sbjct: 252 HLIRIEEVKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSARGETLEKFKKGEAR 311

Query: 302 ILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL 361
           ++V +D+AARG+DI  + HV NF++P   EDYVHRIGRTGRAG  G A ++ +PD+ + +
Sbjct: 312 LMVCSDVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRAGMEGHAFTIASPDDGRFV 371

Query: 362 KSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGSGGGGGR 421
            +IE M    I    + G  A  ++                 AR        G GG G  
Sbjct: 372 GAIEAMIGTTIPRISVEGVPALDLD---------------MTAR-------KGRGGRGAP 409

Query: 422 KD-KGKDKGKEKSASNSNGRGERPAREQKPREGTPAREQQRPAPRAAADRAPDEFLDDDI 480
           KD K   +GK+  A        +P RE++PR       +  P   A    AP+E      
Sbjct: 410 KDAKRPARGKDDEA--------KPRRERRPRRDEAPVAEAAPVEAA----APEEV----- 452

Query: 481 DNFGNRVDYVPQQKPAQGRGRRPGAPAQGAAAGAPRSGQPQGRQNGPRNSNGSSTGTPPA 540
                 ++   +++P + RGR       G     PR  +P                    
Sbjct: 453 ------IERPREERPERSRGR-------GRDREEPRRDEP-------------------- 479

Query: 541 KRSGPRNGAPRDGQARRDDTRPRRPAREDQ 570
           +R  PR G     + RRD+   RR  R D+
Sbjct: 480 RREEPRRGGRNRDEGRRDERGGRRRGRIDE 509



 Score = 36.6 bits (83), Expect = 3e-06
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 497 QGRGRRPGAP--AQGAAAGAPRSGQPQGRQNGPRNSNGSSTGTPPAKRSGPRNGAPRDGQ 554
           +GRG R GAP  A+  A G     +P+ R+  PR          P + + P     R  +
Sbjct: 401 KGRGGR-GAPKDAKRPARGKDDEAKPR-RERRPRRDEAPVAEAAPVEAAAPEEVIERPRE 458

Query: 555 ARRDDTRPRRPAREDQPRQEPAVQNPR 581
            R + +R R   RE+  R EP  + PR
Sbjct: 459 ERPERSRGRGRDREEPRRDEPRREEPR 485