Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 453 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  307 bits (786), Expect = 7e-88
 Identities = 173/457 (37%), Positives = 269/457 (58%), Gaps = 17/457 (3%)

Query: 2   SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           SF +  L++ L+ A++ AGYT+PTP+Q++ IP  L G+D++  AQTGTGKT  + LP+L 
Sbjct: 7   SFENFKLNKQLLEAVKEAGYTKPTPIQEKTIPLALAGQDILGIAQTGTGKTAAYVLPLLM 66

Query: 62  RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNP 121
                    K++       R L+L PTREL  Q+ ++     +      AC++GGVG  P
Sbjct: 67  ---------KTKYAQGEHARALILAPTRELVIQIEQAILTLGKYTDLRYACLYGGVGPTP 117

Query: 122 QVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
           Q++ +  GVD+++A PGR +D+  +G + + +++ +V+DEAD+M+DMGF+  ++ +L  +
Sbjct: 118 QIEKIRAGVDIIIATPGRFMDIYSKGELFVRNIKTMVMDEADKMMDMGFMPQIRSILEVI 177

Query: 182 PAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLP-ASHKRALL 240
           P KRQN+LFSATFS+ +  ++ + L  PERIE+    TT + + Q  + +P    K  LL
Sbjct: 178 PVKRQNMLFSATFSERVERISHEFLEFPERIEIALQATTADTVAQTKYFVPNLKTKITLL 237

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLD--KHGLPAVAIHGNKSQNARTKALADFKAG 298
            HL+      +V+VFT+++  A  + +YL+  KHG   V IH NK QN R  ++ DFK+G
Sbjct: 238 DHLLQNEEINRVIVFTKSRKNAEAVYQYLERRKHGEIRV-IHANKGQNTRINSVDDFKSG 296

Query: 299 EVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEE 358
           +VRILVATD+AARGLDI  + HVVNF++P + EDYVHR+GRTGRA + G A + V P EE
Sbjct: 297 DVRILVATDVAARGLDISMVSHVVNFDVPLIYEDYVHRVGRTGRAEQEGAAFTFVNPAEE 356

Query: 359 KLLKSIERMTKQKIADGDLMG--FDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGSG 416
                IE + + ++ +  +      A T  AEK +  +R ++   R    P   G     
Sbjct: 357 YHFGRIEEIIRMEVPEEPIPKEVRIADTPFAEK-QAYDR-EIDKQRQKADPTFKGAFHEK 414

Query: 417 GGGGRKDKGKDKGKEKSASNSNGRGERPAREQKPREG 453
                 +   +  K+K   N N + +R   + K + G
Sbjct: 415 KVRANTNPHYNPEKKKVRGNKNSKAKRNRNQMKKKGG 451