Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 416 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  355 bits (910), Expect = e-102
 Identities = 177/372 (47%), Positives = 255/372 (68%), Gaps = 4/372 (1%)

Query: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F  L +   ++ A+E  GY +PT +Q +AIP +L+GRD++  AQTGTGKT  FA+PI+
Sbjct: 1   MKFKDLRIIPPILKALEDKGYDEPTSIQAQAIPHILEGRDVLGCAQTGTGKTAAFAIPII 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           + +    H          + R L++TPTRELA Q+ E+   YA++       IFGGV   
Sbjct: 61  QHI----HEAPYANEPWAKIRSLIVTPTRELAIQIGENIDEYAKNTNVSHTVIFGGVKQG 116

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
            QV  + +GV +LVA PGRLLDL  QG + L  +++ VLDEADRMLDMGF++D+KK+L  
Sbjct: 117 AQVAQLKKGVHILVATPGRLLDLIDQGHISLKAIDLFVLDEADRMLDMGFINDIKKLLKI 176

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240
           LP KRQ+L FSAT   +I  L+ ++L NP+++EVTP ++T E I+Q ++    S K++LL
Sbjct: 177 LPKKRQSLFFSATMPDNILQLSKEILDNPQKVEVTPVSSTAETIQQYIYYTNKSSKKSLL 236

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
            H++     +QVL+F+RTKHGA+R+   L K  + A AIHG+K+QN R + L+DFK  ++
Sbjct: 237 IHILEKEGMDQVLLFSRTKHGADRIVRDLKKKHIKAAAIHGDKAQNQRQRVLSDFKDNKL 296

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARG+DID+L +V+NF++P+  E Y+HRIGR+GRAG  G AISL  P+E   
Sbjct: 297 RVLVATDIAARGIDIDKLKYVINFDIPDTPETYIHRIGRSGRAGEEGTAISLCEPEENAD 356

Query: 361 LKSIERMTKQKI 372
           +K+IE++  + I
Sbjct: 357 VKAIEKLANKNI 368