Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  352 bits (903), Expect = e-101
 Identities = 215/534 (40%), Positives = 291/534 (54%), Gaps = 51/534 (9%)

Query: 2   SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           SF  LGLSE +V ++   GYT PTP+Q +AIP +L+GRDL+  AQTGTGKT  F LPI+E
Sbjct: 15  SFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74

Query: 62  RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNP 121
            L       ++ R   R  R L+L PTREL  Q+ ++ + + +        + GG  +N 
Sbjct: 75  MLMK-----QADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINK 129

Query: 122 QVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
           Q   + +G D+LVA PGRLLDL  + ++ LS V  LVLDEAD+MLD+GF+HD++K+   +
Sbjct: 130 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMV 189

Query: 182 PAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRV-FRLPASHKRALL 240
           P KRQ LLFSAT  K I++LA   L +P ++EVTPP    +++EQ V F    + K  LL
Sbjct: 190 PPKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLL 249

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300
              +      + +VF RTKHGA +L ++L+  G    +IHGNKSQ  R +AL  FK GE+
Sbjct: 250 KKSLNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEI 309

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           ++LVATD+AARG+DI  + HV N++LP V + YVHRIGRT RAGR G AI+  APDE +L
Sbjct: 310 KVLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRL 369

Query: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGSGGGGG 420
           L  IE+          LM  D      E+P     P    P N RG R    N  G   G
Sbjct: 370 LHDIEK----------LMKIDIPVASGERPAGLASP--TRPNNNRGGRN---NNGGQPRG 414

Query: 421 RKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPAREQQRPAPRAAADRAPDEFLDDDI 480
            ++ G+  G+            RP+R   PR+     E      R               
Sbjct: 415 PREGGRHNGE-----------SRPSRNHAPRDADNDLEVTSDFKRVKQAEG--------- 454

Query: 481 DNFGNRVDYVPQQKPAQGRGRRPGAPAQGAAAGAPRSGQPQGRQ---NGPRNSN 531
            + G       Q++PA    R+PG    GA   AP  G  Q ++   NG R  N
Sbjct: 455 -DAGRPAGPRKQRRPA----RKPG--GSGANRHAPAGGNGQEKRASGNGNRGRN 501



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 512 AGAPRSGQPQGRQNGPRNSNGSSTGTPPAKRSGPRNGAPRDGQARRDDTRPRRPAREDQP 571
           AG     +P   + G RN+NG   G P     GPR G   +G++        RP+R   P
Sbjct: 390 AGLASPTRPNNNRGG-RNNNG---GQP----RGPREGGRHNGES--------RPSRNHAP 433

Query: 572 RQEPAVQNPRSNQPKIMHKESKADRFPTPEQLDQLPSRPRG 612
           R         S+  ++   E  A R P   +  + P+R  G
Sbjct: 434 RDADNDLEVTSDFKRVKQAEGDAGR-PAGPRKQRRPARKPG 473