Pairwise Alignments

Query, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

Subject, 503 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  325 bits (832), Expect = 4e-93
 Identities = 187/420 (44%), Positives = 251/420 (59%), Gaps = 19/420 (4%)

Query: 2   SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           +F+ LGLS+ ++ AI  AGYT PTP+Q  AIP  L+ RD+   AQTGTGKT  F LP+L 
Sbjct: 3   TFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLT 62

Query: 62  RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNP 121
            L       +  R   R PR L+L PTRELAAQV E+F+ Y ++ K   A + GGV    
Sbjct: 63  LL-------EKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFED 115

Query: 122 QVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
           Q + + RG DVL+  PGRLLD   +G + ++ VEILV+DEADRMLDMGF+ D++++   +
Sbjct: 116 QDRKLERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMI 175

Query: 182 PAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASH-----K 236
           P  RQ L FSAT   +I  LA + L NP RIEV  P++T + + QR+    A+H     K
Sbjct: 176 PFTRQTLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIV---AAHNKDYEK 232

Query: 237 RALLAHLITAGAWE--QVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALAD 294
           RA+L  L+ A   E    ++F   K     L   LD+HG    A+HG+  Q +RT  L +
Sbjct: 233 RAVLRDLVRAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQN 292

Query: 295 FKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVA 354
           F+ G++ +LVA+D+AARGLDI  + HV NF++P   EDYVHRIGRTGRAGRSG+A +LV 
Sbjct: 293 FRDGQLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVT 352

Query: 355 PDEEKLLKSIERMTKQKI--ADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGP 412
             + K L +IE++  +KI    GDL    A     E    R     R+ R     R D P
Sbjct: 353 KSDAKYLDAIEKLIAEKIEWLSGDLSSLPAPMESFESNSGRRGTKERSGRGRDRNRRDAP 412