Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

Subject, 191 a.a., RNA polymerase, sigma 24 (sigma E) factor (NCBI) from Escherichia coli BW25113

 Score = 68.9 bits (167), Expect = 5e-17
 Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 16/152 (10%)

Query: 37  RVLNQDDADDIIQLTYLEAWRNQQKFKGLAKQDTWLCGIALNLIRNHFRRFYAQPPLSTF 96
           R +   D  D++Q  +++A+R    F+G +   TWL  IA+N  +N+      +PP S  
Sbjct: 39  RYVPSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDV 98

Query: 97  D--ESEFSESS---------DDIDLSELCDNRRLLDRTLLAMDELPKDMRDTLWTAVDTE 145
           D  E+E  ES          +++ LSE  + R+++ RT+   + LP+D+R  +       
Sbjct: 99  DAIEAENFESGGALKEISNPENLMLSE--ELRQIVFRTI---ESLPEDLRMAITLRELDG 153

Query: 146 SSYRDAAERLGVPIGTVRSRLFRAREQLKRSV 177
            SY + A  +  P+GTVRSR+FRARE +   V
Sbjct: 154 LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185