Pairwise Alignments

Query, 1147 a.a., IcmF-related protein from Pseudomonas fluorescens FW300-N2E2

Subject, 1285 a.a., type VI secretion system membrane subunit TssM from Paraburkholderia sabiae LMG 24235

 Score =  237 bits (604), Expect = 5e-66
 Identities = 258/1118 (23%), Positives = 451/1118 (40%), Gaps = 144/1118 (12%)

Query: 102  VRSRFKQALSTLRSSSLYPGRSERWRNDLPWYLMIGPPASGKTRLLDRSGLEFPLNKLER 161
            +R+R   A+ T+++S +          +LPWY++IG PA+GK+  +  SGL+FP      
Sbjct: 102  LRTRLVDAVKTIKTSKIGQTSGGSALYELPWYIVIGNPAAGKSSAVLNSGLQFPFADKND 161

Query: 162  KPIGDTSGTRYCDWYFAEHAVLVDTAGRYLTQTDSDVDSSVWAVLLELLRKRRRSRPLNG 221
              +    GTR CDW+F    +L+DTAGRY    +   D + W   L LL++ R   P+NG
Sbjct: 162  AVVHGIGGTRNCDWFFTTEGILLDTAGRYSVHEE---DRTEWLGFLGLLKRFRPKAPING 218

Query: 222  VLVTVPTEVLLLGSEDEVTTLARQIRGRLQELQQRLHVDVPVYLVLSKADNVPGFNEFFD 281
            ++VT     L     +    LA+ +R R+QEL ++L V  PVY++ +KAD + GF EFF 
Sbjct: 219  IIVTASIAELTGSKPEFAINLAKNLRQRVQELTEKLEVFAPVYVMFTKADLITGFTEFFS 278

Query: 282  SLTREENDQVLGAS--FSRDQRGCDVAVLRAEFEALLHRLNSQVIMRMHQERDPLRRSCM 339
               R E D+V GA+  +  D++   VA     FE L   L    + ++   R        
Sbjct: 279  GNERHEYDRVWGATLPYQPDEKRDVVAAFDQHFEDLYEGLKEISVAQLSISRGNKLSPGQ 338

Query: 340  LDFPHQLGQLGTSLCLLVEQAFTGS----VGTLRGFYLTSASSSGRTNTAPGGR------ 389
            L FP +   +  +L   +   F  +        RGFY TSA   G TN+A   R      
Sbjct: 339  LSFPLEFSTIKPALRAFIATLFENNPFQYKPIFRGFYFTSALQEGETNSAAAQRIANRFG 398

Query: 390  ----------------SRFIKHLISRVIFPEAD-LTDLVQRERRRLHWGQRVMYFGALTV 432
                              F++ L S+VIF +   +       + RL   +   +FG + +
Sbjct: 399  LSSDALPKPQSAFSKNGFFLRDLFSKVIFADRQTVRQFASPAKARL---RVATFFGFVVI 455

Query: 433  IGLCGLLWAHGFSANHERLDSLRTLTQRWDQQQSVQANADDWTSMLESLDI---RFEATQ 489
            + L    W      N +   +++      D    +Q   +D  S L+++D+   R E  +
Sbjct: 456  LALALGGWTWSTIGNQQLAANVQA---DLDNVVRMQQGRNDLQSRLQAMDVLEDRIEQLE 512

Query: 490  VFPPYRAVPLHERVGLYQGEASNPAVTNAYERDLQGRLLPKVAQRLEAHVRNNWNDREQL 549
             F   R  PL   +GLYQG+     +   Y   ++  +L  V+Q L + +++  +  +QL
Sbjct: 513  QF--RRERPLSVSLGLYQGDRLEQRLLTEYYNGIKQIMLTPVSQSLASFLKDVDSHPDQL 570

Query: 550  ----------------------------------------LNSLRAYLMLGLQERRDVAW 569
                                                     N+L+ YLML  +   + A 
Sbjct: 571  APMTHAPDSGAIPVSAHTAMTSAAQGGLYSDASPTNVEDAYNALKTYLMLSDKRHVETAH 630

Query: 570  LKDWLAN--DGSLRYPGNTALQEGLNAHLERLL----------ELPFIHALNEPLVAQAR 617
            L D +A    G L        ++ +    ER++          + P I A N  LV Q R
Sbjct: 631  LTDQVARFWRGWLEQNRGNMPRDEMIKSAERMITFYLSRVSDDDWPMIDA-NLSLVDQTR 689

Query: 618  EALRRESLATVVYRMLHEQ-----ASHLPQYRLSQHLGSQGALLVGTDRVIPGFYTRQGY 672
            + LRR        + ++E+     ++      +++ +G   A ++     IPG +TR  +
Sbjct: 690  DNLRRVVRGMPARQRVYEEIKARASTRFAPMTIARIVGDNNAGVIAGSYAIPGTFTRDAW 749

Query: 673  ERYFSVQGA---ALVTELLRDNWVLGEGEGLSRMDM------RRLMVELEQLYFRDYADH 723
             +Y  VQ A   A   EL   +WVL      +R D+       ++   L  +Y  +YA H
Sbjct: 750  FQY--VQPAIRDAATKELQAKDWVLNTS---ARDDLTLEGSPEQIQKTLVGMYKTEYAQH 804

Query: 724  WSEAVGQVALQTISNAGEGAEQLAGLTSAH-SPILRMLVQVRDHTRIQAVAEQIDDLTRA 782
            W + +  +A+Q+  N  +  + +  L     SPI ++L    + T     +     L  A
Sbjct: 805  WQKFMQGIAVQSFGNFNQAVDAMNRLGDPQDSPIRKVLETAYEQTSWDNPSLANVALKSA 864

Query: 783  AGNAGHAV----TKLSAVAGKASASLAENLPDTAQKSLRRRFEPLHRLLDPDNGPTADLV 838
             G   + V    ++  A    A+  +     D     +   F  L R++   NG  + L 
Sbjct: 865  QGGVVNWVKQWFSRTPASQVNANIDINGKPVDLPMGPVGADFAGLARIV-VKNGDVSLLR 923

Query: 839  QALRAVDEVQLQLANLARASAPEQAAFELARHRMGG------------QRDALSHLRGAS 886
              + ++ +V+ +   L     P   A +L +  + G                L+ L  A 
Sbjct: 924  GYMDSLSKVRTRFNVLKNQGDPGPGARQLMQQTLDGNGSELADSLKYVDEQMLTGLTDAQ 983

Query: 887  ARLPRPLSAWFNVMAEDSWRLVLNDSYRYLNQRYQSELYSFYGKAINKRYPFSAHSASDV 946
             +  RPL     + A   + +V+  +   +N+ + +++Y  +  ++  +YPF+  +  + 
Sbjct: 984  RKALRPLLVRPLMQA---YAVVIQPASAEVNKVWNAQVYQPFQASLASKYPFAGDAKVEA 1040

Query: 947  ALNDFREFFKDQGIVDRFFDNYLQPFISGSAGHYRLRSIEGQSLPMSRVYLDQMA---TA 1003
              ++  + F   G V +F    L P           R+     L ++  + +  A     
Sbjct: 1041 GASEIAQIFGPDGAVAKFVGTTLGPLAVRRGDTLTARTWGDMGLALTPDFTNGFARWVAP 1100

Query: 1004 HTIRRSFFAENPTEPQVQFKLEPYTLDPAVSRAEFRFG--DQMLEYRHGPILPVAFTWPS 1061
                 +  A+  +EPQ  F++ P    P+    E+      Q L YR+ P     F WP+
Sbjct: 1101 LAGGAAGGAQASSEPQTVFQILP---QPSSGTTEYTIAIDGQQLRYRNTPPQWTNFVWPN 1157

Query: 1062 DAQNGRTALVLDKMVGRGVGIEKNTGPWSLFRLFDLMQ 1099
             + +    L      GR + +    G + L +L +  Q
Sbjct: 1158 PSGSPGATLSATTFDGRTIQLVNEPGRYGLEKLINSAQ 1195