Pairwise Alignments

Query, 363 a.a., Cytochrome c oxidase polypeptide II (EC 1.9.3.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 392 a.a., Cytochrome c oxidase polypeptide II (EC 1.9.3.1) from Variovorax sp. SCN45

 Score =  308 bits (790), Expect = 1e-88
 Identities = 154/352 (43%), Positives = 226/352 (64%), Gaps = 9/352 (2%)

Query: 14  VNMAPGATQISNAVFDLHMTIFWICVVIGIIVFGAMFWSMMMHRRSTGQNAAHFHENTRV 73
           +N+  G T+I+     LH  +  +C VI + VF  MF+S+  HR+S G  AA+FHE+  V
Sbjct: 41  LNLPVGVTKIAQEQHLLHTIMMILCTVIFVAVFAVMFYSIWKHRKSVGHKAANFHESVVV 100

Query: 74  EILWTIVPFVILVLMAIPATATLIKMYDSSESDIDIQVTGYQWKWHYKYL---GQDVEFF 130
           E++WTIVPF+I+++MA+PAT  L+   D++ +D+ I+ TGYQWKW Y YL   G+ + F 
Sbjct: 101 EVIWTIVPFLIVIVMALPATKVLVAQKDTTNADLTIKTTGYQWKWGYDYLNGEGEGLAFI 160

Query: 131 SNLATPAEQIHNQSAKG---EHYLLEVDKPLVLPVDAKVRFLVTSADVIHSWWVPAFAVK 187
           S L +    + +  AKG   + YLL+VD PLV+PV+ K+R + T+ DVIH++ VP   +K
Sbjct: 161 STLDSSQRAMSDAGAKGAMPDDYLLKVDYPLVVPVNKKIRIITTANDVIHAFAVPQLGLK 220

Query: 188 RDAIPGFVNEAWTRVDKPGLYRGQCAELCGKDHGFMPIVVEVKSKPDYEKWLGERKAEAA 247
           +DAIPGFV + W R +  G Y GQC ELCGK+H FMPI V+V S  DY  W+ +++  AA
Sbjct: 221 QDAIPGFVRDTWFRAETIGTYYGQCQELCGKEHAFMPIQVKVVSAADYTAWVADQRKIAA 280

Query: 248 QLKELTSKEWTREELVERGDKVYHTTCVACHQAEGQGLPPMFPALKGS-KIATGPIKDHL 306
              +  +K WT  +++ RG+KVY   C ACHQA G+G  P+  AL G  K+        L
Sbjct: 281 AKLDDPTKVWTLPDMLVRGEKVYAANCAACHQANGKGAGPI-KALDGDPKVLDADHSVQL 339

Query: 307 NIVFHGKPGTSMAAFGKQLSEVDIAAVVTYERNAWGNNKGDMVTPKEVLELK 358
           +++ +G+   +M ++ KQLS+ D+AAV TY +N+W N  G +V P EVL L+
Sbjct: 340 HVLLNGQNNGAMPSW-KQLSDTDLAAVATYTKNSWSNKTGQLVQPAEVLALR 390