Pairwise Alignments

Query, 662 a.a., Membrane bound c-di-GMP receptor LapD from Pseudomonas fluorescens FW300-N2E2

Subject, 956 a.a., hypothetical protein from Pseudomonas sp. S08-1

 Score =  167 bits (422), Expect = 3e-45
 Identities = 152/515 (29%), Positives = 229/515 (44%), Gaps = 34/515 (6%)

Query: 146 QSALGSLGWLLLCGAVSAVLGALLLRRQLKPLDYMVHQSHAIARREFLSLPELPRTPELR 205
           Q  L    W  LCG +SA         QL+  D      H       LSL E        
Sbjct: 452 QGLLAPGDWQRLCGQLSAEQPTASGEVQLQTADGRHRWVH-------LSLHE-------- 496

Query: 206 RVVQAMNQMVEKLKALFQEQAERSEKLRVESYQDNLTGLANRRYFEMQLNARVSNPEQAS 265
              QA    +E +     E+    ++L   +  D+LTGL NRR  E  L   +    +  
Sbjct: 497 ---QANLHCIEGIVVDLSERRALEQRLARLAAHDSLTGLVNRRELERLLQGSLEGHGRHF 553

Query: 266 SGYLLLLRVKDLAGLNQRLGGQRTDQLLQAVGEQLLRECARYPETHNLVTRIRGGEFAVL 325
           S +LL L +     +N   G    DQLL+ +   LL       E    + RI G EFAVL
Sbjct: 554 S-HLLFLDLDQFKQVNDLCGHSAGDQLLRQLAGHLLGCLPSQAE----LARIGGDEFAVL 608

Query: 326 APGLVREEALQLAQNLEAALAS-LHATGATDVASVASIGLAPFVHGDSP-QAVLQLGDQA 383
             G  R +AL+ A+ L  A+   + + G        SIG+     G    +  L   D A
Sbjct: 609 LAGYDRPQALEQAERLRLAVEQFVFSYGGRPFRLCVSIGVLELESGVRDWEEALNWADNA 668

Query: 384 LAQAESQGEPGWACLDHSAVASVGDDHHA-WHTLLDQALNHQRFELYFQPVVAARDTQVV 442
            + A++QG       + +  A V       W T L +A+  Q FEL++QPV   +  +  
Sbjct: 669 SSMAKAQGRNRVHLFNPADGALVEHQRQLQWITRLREAIEQQHFELFYQPVRPLQGDEAG 728

Query: 443 LHYKVLSRLLDE-QGQTIPAGRFLPWLERFGWTARLDRLMLEQVLRQMAG---HEQSLA- 497
            HY+VL R  D   G+ +  G+F    ER+G+ A++DR +L +    +A    H+  LA 
Sbjct: 729 AHYEVLLRYRDPASGEWVAPGQFFSAAERYGFLAQIDRWVLRRYCEWLAANPRHQMVLAQ 788

Query: 498 --LNLSSATLADPQALNKIFEILRAHSNLGSRLTLEIGEE-QLPEQAVLEQLTRRLRELG 554
             +NLS+ +L DP+    + E+L  H     RL +EI E   L E         RLR+ G
Sbjct: 789 VNINLSAPSLLDPEFHALLDELLDTHCLPADRLCIEITEMVALAELGSSAGWIERLRQRG 848

Query: 555 FSLSLQRFGGRFSMIGNLSRLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPL 614
             ++L  FG  F+    L  L L  LKIDG+++  I+++   R  + ++ + A  + L  
Sbjct: 849 LKVALDDFGSGFASYAYLRHLPLDLLKIDGTFVLGIERDPINRAMVGSMVQIARQLGLRT 908

Query: 615 IAERVETEGELAVIREMGLFGVQGQLVGEPRRWGD 649
           +AE VE+E     +RE+G+   QG  +  PR  G+
Sbjct: 909 VAEFVESEAAQNCLRELGIDYAQGYFIDRPRPLGE 943