Pairwise Alignments

Query, 445 a.a., Type I secretion system, membrane fusion protein LapC from Pseudomonas fluorescens FW300-N2E2

Subject, 437 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  158 bits (399), Expect = 4e-43
 Identities = 114/406 (28%), Positives = 196/406 (48%), Gaps = 13/406 (3%)

Query: 48  WANFAVIDEVTKGDGKAIPSSKIQKVQNLEGGIVAELFVKEGQIVEAGAPLIRLDDTRFV 107
           WA    +       G  +  S  +KVQ+ +GG+V E+ V EG+ V+AG  ++RLD T+  
Sbjct: 35  WAATTNLAGAVVASGHLVVDSYTKKVQHPKGGVVGEILVNEGERVKAGDVVMRLDATQTR 94

Query: 108 SNVGETEADRLSMLLRVERLSAEVDD-RPLNFPADVLKA-----VPGQAASEESLYISRR 161
           +N+         +  R+ RL AE DD   L FP  ++       V     SE  L+  R+
Sbjct: 95  ANLAIVTKRLDELGARMARLEAERDDLAELIFPQALIARRDDPDVASAMRSETKLFEFRK 154

Query: 162 QQLHDEIGGLQEQLIQRQQELREFVSKQAQYRSGLALQRQEINMSEPLVAQGAVSPVEVL 221
                    L E++ Q + E+    +++  Y +GLA+   EI   + L  QG VS   + 
Sbjct: 155 SYREGRKAQLAERITQFEHEIEGLKAQEVAYDNGLAVLEAEITSQKSLREQGVVSVQRLN 214

Query: 222 RLKRAEVETRGQLDATTLAIPRAESAIKEVQRKIDETRGKFRSDALTQLNEARTDLNKAQ 281
            L+       G+         +    I E + +I +   + R++   +L E +  + +  
Sbjct: 215 SLQTQAATFGGERGEKIAYQAQTAGRITETKLQILQIDQELRTEVGRELREIQAQMGEFV 274

Query: 282 ATGKALEDRVSRTLVTSPVRGIVNKLLVNTIGGVIQPGSDLVEIVPLDDTILVEAKIRPQ 341
               A ED + R  + +P  G+V+++ V+T+GGV+ P   ++ IVP  D + +E +I P+
Sbjct: 275 ERKVAAEDELKRIDIVAPQSGMVHEMAVHTVGGVVTPADPIMLIVPDGDELALEVQIVPK 334

Query: 342 DIAFLHPGQDATVKFTAYDYTIYGGMKAKLEQIGADTITDEDKKTTYYIIKLR---TERS 398
           DI  L  GQ A ++ TA++  +   ++  + +I AD  TD+    +YY+ ++    +ER 
Sbjct: 335 DIDQLQVGQKAMLRMTAFNQRVTPELEGHVSRIAADITTDQRTGLSYYLARISVPVSERE 394

Query: 399 HLGTDEKPLLIIPGMVASVDIITGKKTVLSYLLKPIIKARAEALHE 444
            L  +  PL  +PGM A   I T ++T LSY+ KP+    + A  E
Sbjct: 395 KL--NNAPL--VPGMPAEAFIQTSERTALSYIAKPLTDQISRAFRE 436