Pairwise Alignments

Query, 428 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

Subject, 431 a.a., Outer membrane low permeability porin, OprD family from Pseudomonas sp. S08-1

 Score =  300 bits (768), Expect = 6e-86
 Identities = 180/448 (40%), Positives = 255/448 (56%), Gaps = 47/448 (10%)

Query: 5   RISMIALGILSTTHAMA-NDQAESKGFVEDSSLKVLLRNAYINRDYKD---GNQDKAEWG 60
           ++S +AL + + +  +A   QA++KGFVEDS L +L RN Y  RD+K+   G   + EW 
Sbjct: 5   KLSCLALAVAAASSQLAVAGQADAKGFVEDSELSLLNRNYYFQRDFKNNPGGQNYREEWA 64

Query: 61  QAAIGTFSSGFTQGTVGVGVDAFGLYALRLDGGKGRSGAGGIDFFKQGDSGNAADDLSKF 120
              +  F+SGFTQGTVG G DA+G   ++LD G+GR+G G +      D G A D+  + 
Sbjct: 65  HGVMAEFASGFTQGTVGFGADAYGYMGIKLDSGRGRTGTGLLPI---SDEGRAQDEYGEA 121

Query: 121 GAAVKFRVSNTVLAYGDQMPALPVLSYDNSRLLPESYTGTLITSKEIKGLELNAGRFTAE 180
           G A K R+S TVL YG+     PV +  +SRLLPE+ TG  ++S EI+GL L AG FTA 
Sbjct: 122 GGAAKLRISETVLKYGEMRTEAPVFATAHSRLLPETATGFHVSSGEIEGLALEAGHFTAY 181

Query: 181 SRKSAEGRD--------SGGL-KSINVLGGSYQFTEQFKASLYASDVEDVLKKQYVNANY 231
           + +++   D        SG + K+I+  GG Y  ++     LYAS  ED   + Y N NY
Sbjct: 182 NNRNSTNSDEELYLNYGSGEIGKTIDFAGGWYNVSDDLALGLYASRFEDTWNQYYGNLNY 241

Query: 232 VFPLAKDQSLTLDFNGYRTKLDNSYVRENNVTGDDNKIWSLAATFATGPHSFTLAHQRST 291
              +++ QSL  D N YRT  D     + +++   N  +SLAAT+A G HS  LA+QR  
Sbjct: 242 TLGISEGQSLNFDLNLYRTS-DTGDALQGDIS---NTTYSLAATYALGSHSILLAYQRVN 297

Query: 292 GDSNLGYAYGGYQREQNRVGDGGNTIYLANS-YWSDFNAEDERSWQLGYGLDFTTFGVPG 350
           GD+   Y              GG++I+L+NS  +SDFNA +E+SW++GYG D++  GVPG
Sbjct: 298 GDTPFDYV-------------GGDSIFLSNSMQYSDFNAPNEKSWRIGYGYDWSGLGVPG 344

Query: 351 LTYNVAYVRGDNITTSTS-----------EGGTEREIFNQFKYVVQSGPAKDLSVRLRSS 399
           LT  V YV+G +I  + +           E G   E     KYVVQ GPAKDLSVRLR +
Sbjct: 345 LTTKVTYVKGSDIDGTDADVNGGYVGYYGEDGKHSETDIDIKYVVQEGPAKDLSVRLRQA 404

Query: 400 VLRVSQKSSEYNVSGNELRVFVDYPINV 427
               +    E ++  +E RV VDYP+++
Sbjct: 405 FHYANDDQGEGDL--HEFRVIVDYPLSI 430