Pairwise Alignments

Query, 428 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

Subject, 430 a.a., OprD family porin from Pseudomonas fluorescens SBW25

 Score =  343 bits (880), Expect = 6e-99
 Identities = 203/439 (46%), Positives = 268/439 (61%), Gaps = 34/439 (7%)

Query: 7   SMIALGILSTTH--AMANDQAESKGFVEDSSLKVLLRNAYINRDYKDGNQDKA---EWGQ 61
           SMIAL + + T   AMA+ Q +SKGF+EDS+  +L R  Y +RD ++   +++   E G 
Sbjct: 7   SMIALAVSAGTSQFAMASAQDDSKGFIEDSTASILTRALYFSRDRRNQGAEQSRIEETGL 66

Query: 62  AAIGTFSSGFTQGTVGVGVDAFGLYALRLDGGKGRSGAGGIDFFKQGDSGNAADDLSKFG 121
              G FSSG+TQGT+GVGVD  GL  ++LD GKGR+G G    F +G  G + DD SK G
Sbjct: 67  GFHGLFSSGYTQGTIGVGVDVIGLLGVKLDSGKGRAGTG---LFPEGSDGRSQDDYSKAG 123

Query: 122 AAVKFRVSNTVLAYGDQMPALPVLSYDNSRLLPESYTGTLITSKEIKGLELNAGRFTA-- 179
           AAVKFR+SNTVL  GDQ    PV + D+SRLLPE   G  ITS EIK L+L AG FT+  
Sbjct: 124 AAVKFRISNTVLKVGDQYTTAPVFASDDSRLLPELPQGVSITSNEIKDLKLEAGHFTSIV 183

Query: 180 -------ESRKSAEGRDSGGLKSINVLGGSYQFTEQFKASLYASDVEDVLKKQYVNANYV 232
                  +S  S+E     GL+  N +GG Y +T +   SLY S VED  KK Y N N+ 
Sbjct: 184 AQDQTYRDSIGSSEPGSKRGLRDANFVGGVYSWTPEITTSLYYSKVEDYWKKLYANVNWT 243

Query: 233 FPLAKDQSLTLDFNGYRTKLDNS-YVR--ENNVTGDDNKIWSLAATFATGPHSFTLAHQR 289
             L+ DQS+ +DFN Y TK D +  VR  +++ T  DN+ +SL   +  G H+FTLA Q+
Sbjct: 244 HALSDDQSVAVDFNIYDTKSDGAGLVRADKDSTTKLDNRAFSLQGAYTIGAHTFTLAAQK 303

Query: 290 STGDSNLGYAYGGYQREQNRVGDGGNTIYLANSY-WSDFNAEDERSWQLGYGLDFTTFGV 348
            +GD   GY             DGG TI+LANS   SDFNAEDE+S+Q  Y L+  TFG+
Sbjct: 304 VSGDGQYGYGV-----------DGGGTIFLANSIARSDFNAEDEKSYQARYDLNMATFGI 352

Query: 349 PGLTYNVAYVRGDNITTSTSEGGTEREIFNQFKYVVQSGPAKDLSVRLRSSVLRVSQKSS 408
           PGL++   YV+G    TST+  G E E   + KYV+QSGPAKDLS+R+R +  R S +  
Sbjct: 353 PGLSFMTRYVKGTGANTSTTNNGKEWERDIEAKYVIQSGPAKDLSLRVRQATYRSSDQ-- 410

Query: 409 EYNVSGNELRVFVDYPINV 427
            Y+ S +ELR+   YP+N+
Sbjct: 411 VYSGSLDELRLIAQYPLNI 429