Pairwise Alignments

Query, 475 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Pseudomonas fluorescens FW300-N2E2

Subject, 445 a.a., N-acetylmuramoyl-l-alanine amidase II (NCBI) from Escherichia coli BW25113

 Score =  234 bits (597), Expect = 4e-66
 Identities = 163/428 (38%), Positives = 232/428 (54%), Gaps = 51/428 (11%)

Query: 11  VVAVVGLLLTALAVDAVAETKVNSVRLWRAPDNTRLVFDLTGPVQHSVFTLTAPDRLVID 70
           +VA + LL T +    +++ +V++          R+     G   ++ F+  +   + +D
Sbjct: 9   LVATLLLLCTPVGAATLSDIQVSN-----GNQQARITLSFIGDPDYA-FSHQSKRTVALD 62

Query: 71  IN--GASLGAPLNVATANTPITAMRSAQRTPTD---LRVVIDLKKAVTPKSFTLAPNAQY 125
           I   G   G PL + + N  + A+RS   TP D   LR+V+DL    T    T A   Q 
Sbjct: 63  IKQTGVIQGLPL-LFSGNNLVKAIRSG--TPKDAQTLRLVVDL----TENGKTEAVKRQN 115

Query: 126 GNRLVVDLFDNPADATPPPPPTNVAT----VPAVPV------------------------ 157
           G+   V +F   AD  PPPPP  V       PAV                          
Sbjct: 116 GSNYTV-VFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNPFKTESNRTTGVISS 174

Query: 158 -TPTEPALKLPPAPAGKRDIIVVIDAGHGGEDPGASGSRGQREKDVVLSIARELQRQVNG 216
            T T PA +       K  II+ IDAGHGG+DPGA G  G REK+V ++IAR+L+  +N 
Sbjct: 175 NTVTRPAARATANTGDK--IIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLND 232

Query: 217 MKGFRAELTRTGDYFIPLRGRTEIARKKGADLFVSIHADAAPSAAAFGASVFALSDRGAT 276
              F+  LTR GDYFI + GR+++ARK+ A+  VSIHADAAP+ +A GASV+ LS+R A 
Sbjct: 233 DPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNRSATGASVWVLSNRRAN 292

Query: 277 SETARWLADSENRSDLIGGAGNVSLDDK-DRMLAGVLLDLSMTASLTSSLNVGQKVLSNI 335
           SE A WL   E +S+L+GGAG+V  + + D  L+  +LDL    S     +V   ++S +
Sbjct: 293 SEMASWLEQHEKQSELLGGAGDVLANSQSDPYLSQAVLDLQFGHSQRVGYDVATSMISQL 352

Query: 336 GRVTPLHKQRVEQAGFMVLKSPDIPSILVETGFISNANEASKLSSANHQQALARSISSGV 395
            R+  +HK+R E A   VL+SPDIPS+LVETGFISN +E   L+S ++QQ LA +I  G+
Sbjct: 353 QRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDYQQQLAEAIYKGL 412

Query: 396 RQFFQQNP 403
           R +F  +P
Sbjct: 413 RNYFLAHP 420