Pairwise Alignments

Query, 475 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Pseudomonas fluorescens FW300-N2E2

Subject, 417 a.a., putative amidase (VIMSS) from Escherichia coli BW25113

 Score =  265 bits (678), Expect = 2e-75
 Identities = 160/390 (41%), Positives = 225/390 (57%), Gaps = 12/390 (3%)

Query: 18  LLTALAVDAVAETKVNSVRLWRAPDNTRLVFDLTGPVQHSVFTLTAPDRLVIDINGASLG 77
           LL+   V   A ++V +VR+W A   TR+  +    +++  F L+ P+R+V+DI   +L 
Sbjct: 22  LLSVSQVSLAAVSQVVAVRVWPASSYTRVTVESNRQLKYKQFALSNPERVVVDIEDVNLN 81

Query: 78  APLNVATANTP-----ITAMRSAQRTPTDLRVVIDLKKAVTPKSFTLAPNAQYGNRLVVD 132
           + L    A        I + R  Q  P  +R+V +LK+ V P+ F LAP A +  RLV+D
Sbjct: 82  SVLKGMAAQIRADDPFIKSARVGQFDPQTVRMVFELKQNVKPQLFALAPVAGFKERLVMD 141

Query: 133 LFDNPADATPPPPPTNVATVPAVPVTPTEPALKLPPAP--AGK-RDIIVVIDAGHGGEDP 189
           L+   A     P    +       +    P  +  P P  AG+ R I++++D GHGGED 
Sbjct: 142 LYPANAQDMQDPLLALLEDYNKGDLEKQVPPAQSGPQPGKAGRDRPIVIMLDPGHGGEDS 201

Query: 190 GASGSRGQREKDVVLSIARELQRQVNGMKGFRAELTRTGDYFIPLRGRTEIARKKGADLF 249
           GA G    REKDVVL IAR L+  +      +  +TR  D FIPL+ R   A+K+ ADLF
Sbjct: 202 GAVGKYKTREKDVVLQIARRLRSLIEKEGNMKVYMTRNEDIFIPLQVRVAKAQKQRADLF 261

Query: 250 VSIHADAAPSAAAFGASVFALSDRGATSETARWLADSENRSDLIGGAGNVSLDDKDRMLA 309
           VSIHADA  S    G+SVFALS +GATS  A++LA ++N SDLIGG         DR + 
Sbjct: 262 VSIHADAFTSRQPSGSSVFALSTKGATSTAAKYLAQTQNASDLIGGVSK----SGDRYVD 317

Query: 310 GVLLDLSMTASLTSSLNVGQKVLSNIGRVTPLHKQRVEQAGFMVLKSPDIPSILVETGFI 369
             + D+  + ++  SL  G+ VL+ +G++  LHK +VEQAGF VLK+PDIPSILVET FI
Sbjct: 318 HTMFDMVQSLTIADSLKFGKAVLNKLGKINKLHKNQVEQAGFAVLKAPDIPSILVETAFI 377

Query: 370 SNANEASKLSSANHQQALARSISSGVRQFF 399
           SN  E  KL +A  QQ +A SI +G++ +F
Sbjct: 378 SNVEEERKLKTATFQQEVAESILAGIKAYF 407