Pairwise Alignments

Query, 876 a.a., 3'-to-5' exoribonuclease RNase R from Pseudomonas fluorescens FW300-N2E2

Subject, 875 a.a., 3'-to-5' exoribonuclease RNase R from Pseudomonas fluorescens GW456-L13

 Score = 1575 bits (4077), Expect = 0.0
 Identities = 789/882 (89%), Positives = 827/882 (93%), Gaps = 15/882 (1%)

Query: 1   MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR 60
           MADWQSLDPEAAREAEKYENPIPSRELIL HLADRGSPA+REQLVEEFGLTTEDQ+EALR
Sbjct: 1   MADWQSLDPEAAREAEKYENPIPSRELILQHLADRGSPANREQLVEEFGLTTEDQIEALR 60

Query: 61  RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR 120
           RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRI+GHRDGFGFL+PDDGSDDLFMSPAQMR
Sbjct: 61  RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR 120

Query: 121 LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEV 180
           LVFDGDRALARVSGLDRRGRREG+IVEVVSRAHE+IVGRYFEEGGIGFVV DNPK+QQEV
Sbjct: 121 LVFDGDRALARVSGLDRRGRREGMIVEVVSRAHETIVGRYFEEGGIGFVVADNPKIQQEV 180

Query: 181 LITPGRNGAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV 240
           L+TPGRN  A++GQFVEVKITHWPT RFQPQGD+VEVVGNYMAPGMEIDVALRTYDIPHV
Sbjct: 181 LVTPGRNANAQIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV 240

Query: 241 WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS 300
           WP+AVLKEA KLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEA+PGKLRLFS
Sbjct: 241 WPDAVLKEAGKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEARPGKLRLFS 300

Query: 301 GGWKLFVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR 360
           GGWKL+VAIADVSSYVK+GSALD EAQVRGNSVYFPERVIPMLPEQLSNGLCSLNP+VDR
Sbjct: 301 GGWKLYVAIADVSSYVKLGSALDAEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPQVDR 360

Query: 361 LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRAEYAGVVP 420
           LAMVCEMTISK+GEMTDY FYEAVIHS ARLTYNKVS +LETPK +E + LR EY  VVP
Sbjct: 361 LAMVCEMTISKSGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKATEGRKLRGEYTDVVP 420

Query: 421 HLKQLYSLYKVLLGARHVRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLA 480
           HLKQLYSLYKVLL ARHVRGAIDFETQETRI+FGSERKIA I PT RNDAHKLIEECMLA
Sbjct: 421 HLKQLYSLYKVLLAARHVRGAIDFETQETRIIFGSERKIAEIRPTVRNDAHKLIEECMLA 480

Query: 481 ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLA 540
           ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGP+PKDYQALLA
Sbjct: 481 ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA 540

Query: 541 SIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS 600
            IKDRPD+H+IQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
Sbjct: 541 GIKDRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS 600

Query: 601 VIHSKQNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE 660
           VIHSKQ+TPHV+RAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
Sbjct: 601 VIHSKQDTPHVRRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE 660

Query: 661 FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG 720
           FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
Sbjct: 661 FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG 720

Query: 721 RSFRLGDTVEVQVMRVDLDERKIDFGMSDKPAEAPTGRKKRGNETAAPATKGKGAPAKNA 780
           RSFRLGDTVEV+VMRVDLDERKIDF M++K   AP GRKKRG E+ APA K        A
Sbjct: 721 RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGAESTAPAAK------VEA 774

Query: 781 EPEPAKAGRRSSVKDKAPEAYRPSDAAAKNAELRKSRELKQQLLNEAKSGGKAASGGKSH 840
           EP PAK GRR + K+KA EAYRPSDAAAKNAELRKSRE+KQ LL  AKSGGKAASGGK++
Sbjct: 775 EPAPAKTGRRPA-KEKAVEAYRPSDAAAKNAELRKSREMKQALLAGAKSGGKAASGGKTN 833

Query: 841 GAE-------KPSSKPSKHRKGPPKAGSAPAKSGGSRKPKAK 875
            +        KP +KPSKHRKGPPKAGSAPAKSGG+RKPKAK
Sbjct: 834 RSTPDKAVGGKP-AKPSKHRKGPPKAGSAPAKSGGARKPKAK 874