Pairwise Alignments

Query, 876 a.a., 3'-to-5' exoribonuclease RNase R from Pseudomonas fluorescens FW300-N2E2

Subject, 716 a.a., Ribonuclease R from Azospirillum sp. SherDot2

 Score =  397 bits (1019), Expect = e-114
 Identities = 260/732 (35%), Positives = 376/732 (51%), Gaps = 43/732 (5%)

Query: 19  ENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALRRRLRAMERDAQLIYTRRG 78
           ++  PS++ ILA +    +P  + ++   F L+     E L+  LR +E D  +   R  
Sbjct: 3   DSHFPSKDAILAFIRSSTTPVGKREIARAFKLSGSADRETLKDLLRELEADGTVERGRNK 62

Query: 79  TYAPVDKLDLILGRIAGHRDGFGFLIP-------DDGSDDLFMSP-----AQMRLVFDGD 126
             AP   L  +   +    D  G L         +     +F+ P      + + +  GD
Sbjct: 63  RMAPPQALPAVAVLLVTGADADGELAARPLTWTGEGNPPRIFLLPEKKSRGEEKPLAVGD 122

Query: 127 RALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEVLITPGR 186
             LA+++ ++ R     VI  +       I+G Y      G ++P + + + E L+ P  
Sbjct: 123 TLLAKLARINDRLYEARVIRRIDGEREGRILGVYRPSADGGRILPTDRRHKTEFLVLPPN 182

Query: 187 NGAAKVGQFVEVKITHWPTARF-QPQGDIVEVVGNYMAPGMEIDVALRTYDIPHVWPEAV 245
            G A+ G  V   I   P  R  QPQ  +VE +G+   P     +A+  + IP V+P A 
Sbjct: 183 RGDAEPGDLVFADIL--PAGRAGQPQARVVERLGSTDEPRAFSLIAIHAHGIPTVFPHAA 240

Query: 246 LKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKL 305
           L+EA       + +    R DLR +P VTIDG DARDFDDAV+ EA          GW L
Sbjct: 241 LREAELAAVPAQMQ----REDLRDIPLVTIDGADARDFDDAVWAEADGDPEN--PDGWHL 294

Query: 306 FVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDRLAMVC 365
            VAIADVS YV+ GSALD  A  RGNSVYFP+RV+PMLPE LSNGLCSL P  DR  +  
Sbjct: 295 IVAIADVSYYVRPGSALDRTAYERGNSVYFPDRVVPMLPEALSNGLCSLRPGEDRACLAF 354

Query: 366 EMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRAEYAGVVPHLKQL 425
            + I ++G +  ++    ++ S ARL Y +V       +  E     A+  GV+     L
Sbjct: 355 HLWIDRSGVLIRHRLVRGLMRSVARLIYEQVQD-CHDGRPDEVTGPLAD--GVI---APL 408

Query: 426 YSLYKVLLGARHVRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLAANVAT 485
           +  Y  L  AR  RG ++ +  E R+      ++A I    R+D+H+LIEE M+AANVA 
Sbjct: 409 FGAYARLAAARAKRGTLELDLPERRVHIDERGRVAEIVRRERHDSHRLIEEFMIAANVAA 468

Query: 486 AEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLASIKDR 545
           AE L++  +P LYR+HD P  E++E LR FL  +G  L K  D  TP  +  +L  ++  
Sbjct: 469 AEVLERRTMPGLYRIHDRPSMEKMEALRGFLAGIGHPLTKSAD-LTPDHFTRILRKVEGT 527

Query: 546 PDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIHSK 605
               ++  V+LR+ +QA YS DN GHFGL    Y HFTSPIRRY DL+ HRA+       
Sbjct: 528 SHATLVSEVVLRAQAQAAYSPDNIGHFGLALHRYAHFTSPIRRYADLIVHRAL------- 580

Query: 606 QNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCEFMKDR 665
                ++  G   +    +       L ++G+  S +ERRA  A RD V+     F+ DR
Sbjct: 581 -----IRTLG---LGVGGLDDETLGRLAEIGDHLSSTERRAATAERDAVDRYTAAFLADR 632

Query: 666 VGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTGRSFRL 725
           +G+ F G I+ V+ FGLFV L +   +GLV  ++LP D Y  D   H L G+RTGR++RL
Sbjct: 633 IGDRFSGRISGVSRFGLFVRLDESGADGLVPASSLPDDRYDHDEAAHALVGQRTGRTYRL 692

Query: 726 GDTVEVQVMRVD 737
              V+V ++  D
Sbjct: 693 SSPVKVVLVEAD 704