Pairwise Alignments

Query, 335 a.a., tRNA dihydrouridine synthase B (EC 1.-.-.-) from Pseudomonas fluorescens FW300-N2E2

Subject, 333 a.a., putative TIM-barrel protein, nifR3 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  221 bits (563), Expect = 2e-62
 Identities = 122/307 (39%), Positives = 177/307 (57%), Gaps = 3/307 (0%)

Query: 4   VRIGPYTL-QNGLVLAPMAGVTDQPFRQLCKRLGAGLVVSEMVTSDMSLWNTRKSRLRMI 62
           V+IG   L +  L+LAPM  V+D PFR +CK  GA L+ +E ++S+  + +  KS  ++ 
Sbjct: 2   VKIGNLALGEFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSVQKLD 61

Query: 63  HEGDPEPRSVQIAGGDAQMLAEAARANVELGAQIIDINMGCPAKKVCNKAAGSALLKDEA 122
                 P  +QI G +   + EAA    + G  I+DIN GCP  KV  K AG+ +L D  
Sbjct: 62  IFEYERPIGIQIFGNEIDSMREAAAIAEQAGPDILDINYGCPVNKVACKGAGAGILLDID 121

Query: 123 LVTEILQAVVAAVDVPVTLKIRTGWDRENKNGLVVAKIAEQAGITALAVHGRTRADLYTG 182
            +  +   +V AV++PVT+K R GWD      + V +  +  GI A++VH RTR  +Y G
Sbjct: 122 KMVSMTAEIVKAVNIPVTVKTRLGWDNNTIRIVEVVERLQDVGIQAISVHARTRKQMYKG 181

Query: 183 DAEYDTIAAIK--QAVSIPVFANGDIDSPEKARYVLDATGADGLLIGRAAQGRPWIFREI 240
           +A++  +A IK  Q + IP+F NGDIDSPE+AR   D  G DG++IGRAA G PWIF EI
Sbjct: 182 EADWTYLAKIKENQRIHIPLFGNGDIDSPERAREYRDRFGVDGMMIGRAAIGYPWIFNEI 241

Query: 241 EHFLRTGEKLAAPQLSEVERILLEHLAALHAFYGEVMGVRIARKHVGWYLATLPGAREFR 300
           +H+  TG+KLAAP L E   +  +HL     + GE +G+   R+H   Y   +P  + +R
Sbjct: 242 KHYFETGQKLAAPGLDERINVAKKHLDFSVKWKGEKLGILEMRRHYTNYFRGMPNFKPYR 301

Query: 301 ARFNRLD 307
            +    D
Sbjct: 302 TKMVTAD 308