Pairwise Alignments

Query, 184 a.a., FIG006045: Sigma factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

Subject, 173 a.a., KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) from Escherichia coli BW25113

 Score =  152 bits (384), Expect = 3e-42
 Identities = 78/156 (50%), Positives = 112/156 (71%), Gaps = 2/156 (1%)

Query: 28  LYRSHHSWLHSWLSRRIGCHESAADLAQDTFVRLLKSRQSGPLREPRAYLSSIARGLMID 87
           LY +HH WL SWL+R++     A D+AQDTF+R++ S     +R+PR++L +IA+ +M+D
Sbjct: 16  LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75

Query: 88  RYRRRELERAYFESLALLPPQEAPSEEERLLILDSLERIDRLLDLLKPRVREAFLLAQLD 147
            +RR  LE+AY E LAL+P   APS EER   L++L+ +D +LD L  + REAFLL+QLD
Sbjct: 76  LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135

Query: 148 GLTCLQIAEKLCVSRSTVERDLAKALQHC--YRLRY 181
           GLT  +IA KL VS S+V++ +AKA++HC  +RL Y
Sbjct: 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEY 171