Pairwise Alignments

Query, 493 a.a., Transcription termination protein NusA from Pseudomonas fluorescens FW300-N2E2

Subject, 493 a.a., transcription termination/antitermination L factor from Pseudomonas putida KT2440

 Score =  902 bits (2331), Expect = 0.0
 Identities = 468/493 (94%), Positives = 481/493 (97%)

Query: 1   MSKEVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFR 60
           MSKEVLLVVESVSNEKGVP  VIFEALE+ALATATKKRFEDEVDLRVEINRHTG+YETFR
Sbjct: 1   MSKEVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFR 60

Query: 61  RWTVVEEADLDDPAIETWPSKVAETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKV 120
           RWTVV+EADLDDPAIETW  K+ +THP AKVGDV+EEKIESIEFGRIAAQTAKQVIVQKV
Sbjct: 61  RWTVVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKV 120

Query: 121 REAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVR 180
           REAERAQVVDAYRER+GEIISGTVKKVTRDNVIVDLGNNAEALLAREDII RETFRVGVR
Sbjct: 121 REAERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVR 180

Query: 181 LRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAV 240
           LRALLKEIRTENRGPQLILSRTAP+MLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAV
Sbjct: 181 LRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAV 240

Query: 241 RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIV 300
           RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIV
Sbjct: 241 RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIV 300

Query: 301 DEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRN 360
           DEDAHAMDIAV  DNLAQAIGRGGQNVRLASQLTGWTLNVMTE DIQAKQQAETGDILRN
Sbjct: 301 DEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRN 360

Query: 361 FIEELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEEIVNELRARAKDRLLTKA 420
           FIEELEVDEELAQVLVDEGFTSLEEIAYVP+EEMLNIDGFDE+IVNELRARAKDRLLTKA
Sbjct: 361 FIEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKA 420

Query: 421 IATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDRA 480
           IATEEKLADAHPAEDLLSLEGMDKDLA ELAVRGV+ REDLAEQSIDDLLDIDGID++RA
Sbjct: 421 IATEEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQSIDDLLDIDGIDEERA 480

Query: 481 GKLIMAARAHWFE 493
           GKLIMAARAHWFE
Sbjct: 481 GKLIMAARAHWFE 493