Pairwise Alignments

Query, 336 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

Subject, 319 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Kangiella aquimarina DSM 16071

 Score =  324 bits (830), Expect = 2e-93
 Identities = 166/336 (49%), Positives = 227/336 (67%), Gaps = 23/336 (6%)

Query: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60
           MF  + R    L+ + FG+TLLTF L               +R D  +H    +      
Sbjct: 1   MFKLLIRHGTTLLISLFGLTLLTFVL--------------SQRGDSALHIYQSQHF---- 42

Query: 61  PLYAQYLDYIGKLAQGDLGESLRTRESVWTEFSSLFPATLELSMAALLFAGILGLLAGVI 120
               QYL+Y+  L  GD G S      V  +F   FPAT+EL M ALLFA I GL  G++
Sbjct: 43  --MGQYLEYLQYLLAGDWGYSSIHNRPVLYDFLQHFPATIELVMLALLFAIIFGLTLGIM 100

Query: 121 AALKRGSLFDHGVMGVSLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKTG 180
           AA +RG   D+ +MGV+LAGYSMPI+WWG++L++ FS++LGWTPV+GRID +YD+ P T 
Sbjct: 101 AANRRGKWLDNTLMGVTLAGYSMPIYWWGMLLVLLFSLTLGWTPVAGRIDYIYDVPPVTR 160

Query: 181 FMLIDTLLADEP---GAFLDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTA 237
           FMLID+LL+ +     AF +AL HLILPAI L TIP+A+IARMTRSS+L VL+ +YIRTA
Sbjct: 161 FMLIDSLLSQDQYGFDAFFNALLHLILPAITLSTIPMAIIARMTRSSLLGVLKAEYIRTA 220

Query: 238 KAKGLSPSRVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGA 297
           ++KGLS  R+++VH LRNALIP+LT+ G+QV  +++G ++TE IF+WPG+GKWL+EA+  
Sbjct: 221 RSKGLSQQRIIWVHALRNALIPILTISGVQVSIIMSGVIITEYIFAWPGVGKWLLEAVSR 280

Query: 298 RDYPVVQNGILLIACLVILVNFVVDILYGFANPRIR 333
           RD+  +Q GIL ++ LVI  N  +D+L  + NPR+R
Sbjct: 281 RDFASIQAGILALSLLVIAFNLALDLLASYMNPRLR 316