Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Pseudomonas fluorescens FW300-N2E2

 Score = 79.3 bits (194), Expect = 3e-19
 Identities = 96/413 (23%), Positives = 164/413 (39%), Gaps = 59/413 (14%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           F+L GA + + GM +    FA  L G   GG + V +V+S+  G I+GS +A+  + G  
Sbjct: 61  FVLAGAIMAEGGMSRRLVAFASVLVGFVRGGLSLVNLVASSFFGAISGSSVADTASVGSV 120

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            IP M R GY   +A  V  + S+ + + PP   AV + +A    V    +  A ++P  
Sbjct: 121 LIPEMTRRGYPRDYATAVTVSGSVQALLTPPSHNAVLYSLAAGGTVSIGSLFMAGIVPGI 180

Query: 305 LYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLFS 364
           +    +  +  + AK+   +  PK +              +IPL   + +          
Sbjct: 181 MMNLCLMALCLVFAKK---RNYPKGE--------------VIPLKQALKI-------CRE 216

Query: 365 GMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLVVAC 424
            M G+ +T  +ILG                    G+L   F       +  V    V  C
Sbjct: 217 AMWGM-MTLFIILG--------------------GILSGVFTATESAAIAVVWAFFVTMC 255

Query: 425 WFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGRD 484
            +       L   +H  V   R    V I      S   +++L  + +      L +  D
Sbjct: 256 IYRDYKWSELPKLMHRTV---RTISIVMILIGFAASFGYIMTLMEIPAKITTAFLTLS-D 311

Query: 485 NLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGILADL 544
           N  + L+   +  L+LG  +   P  +I + I  P ++ +GV  +   M +     +  +
Sbjct: 312 NRYVILMCINVMLLLLGTVMDMAPLILILTPILMPVIVGIGVDPVQFGMIMLVNLGIGLI 371

Query: 545 TPPVALACFAAAPIAR---ESGLK--ISFWAVRIALAGFVIPFMTVYNPALML 592
           TPPV    F  + I +   ES +K  + F+A+      FV+  +  Y PA+ L
Sbjct: 372 TPPVGAVLFVGSAIGKVSIESTVKALLPFYAML-----FVVLMLVTYVPAISL 419