Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Pseudomonas fluorescens FW300-N2E2

 Score = 95.1 bits (235), Expect = 6e-24
 Identities = 90/413 (21%), Positives = 176/413 (42%), Gaps = 61/413 (14%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           F+L G  +   G+ K   + AM L GHK GG   VA+++S L+ +++GS +A+       
Sbjct: 62  FMLAGEIMNVGGLSKRIVNIAMALVGHKRGGLGYVAIIASCLLASLSGSAVADAAALAAL 121

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            +P+M   G+    + G+ A  S+ + ++PP +G + F +A  +++   ++  A ++P  
Sbjct: 122 LVPMMVLAGHNRGRSAGLIAAGSIIAPVIPPSIGFIVFGVASGVSIS--KLFLAGIVPGL 179

Query: 305 LYFGSV---FWMVHLEAKRSDLKGLPKDQCPSAWGAVKD-SWFLLIPLGVLVYLLFSGRT 360
           +   S+   +W +   ++  +++  PK         + D SW + +PL +++ L F   T
Sbjct: 180 MLGASLAVAWWYI---SRSENVETPPKRSRAEVLRTLLDGSWAMGLPLIIILGLKFGIFT 236

Query: 361 PLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVL 420
           P  + +V    +  V L     +KVS                          ++ VI   
Sbjct: 237 PTEAAVVAAVYSLFVSLVIYREMKVSQ-------------------------LYEVI--- 268

Query: 421 VVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGS-IIAVVSLTGVASTFAGYIL 479
                 +   + T V+ L              +A A+V S ++ +  L G  +     +L
Sbjct: 269 ------LSSAKTTSVVMLL-------------VAAAMVSSWLVTIADLPGQLAE----ML 305

Query: 480 AIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFG 539
           A   DN  L L++ M   +++G  +   P  +I + +  PA+++ G+  +   +      
Sbjct: 306 APFMDNQTLLLLVMMTLIILVGTVMDMTPTILILTPVLMPAVIQAGIDPVYFGVLFLINT 365

Query: 540 ILADLTPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALML 592
            +  +TPPV         +A+    +I         A FV+ F+ V  P L+L
Sbjct: 366 AIGLITPPVGTVLNVVCGVAKLDFEEIVRGVWPFMFAQFVVLFLLVLFPQLVL 418