Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 468 a.a., Sialic acid TRAP transporter large permease protein SiaM from Xanthobacter sp. DMC5

 Score = 87.4 bits (215), Expect = 1e-21
 Identities = 98/425 (23%), Positives = 171/425 (40%), Gaps = 34/425 (8%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           FIL G  +  AG+      FA+ L G   GG  +V ++ S +   ++G+ IA+    G  
Sbjct: 60  FILAGNLMNIAGVTGRIYAFAVALVGWMRGGLGQVNIIGSVIFSGMSGTAIADAAGLGTI 119

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVP--FVEIAKAALIP 302
            I  MK  GY   FA GV A S+    I+PP +  V + M   +++   F+      ++ 
Sbjct: 120 EIKAMKDHGYSTEFAVGVTAASATLGPIIPPSLPFVIYGMLANVSIGALFLGGVVPGVVM 179

Query: 303 ACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGA-VKDSWFLLIPLGVLVYLLFSGRTP 361
             L  G+V +  H                 + WG+    +W  L+   + V ++ +    
Sbjct: 180 TLLMMGTVAYFAH----------------RNGWGSDAAFNWRQLLSASIEVVIVLAFPAA 223

Query: 362 LFSGM-VGLALTAIVILGSAIILKVSNYALRCAFW------IALGLLCVGFFRLGIGVVF 414
           ++  + VGL+    V++  A+++ +  Y    A        I +G + +G+F      V 
Sbjct: 224 VYVMIEVGLSTNQAVLIALAVLIALDWYFDFSAVMALMTPVILIGGMTLGWFTPTEAAVA 283

Query: 415 AVIGVLVVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTF 474
           AVI  L +    ++    TL     A  D       V            +++ +  A   
Sbjct: 284 AVIWSLFLG--LVRYRSMTLKTLAKATFDTIETTASVLFIVTAASIFAWLLTASQAAQML 341

Query: 475 AGYILAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMF 534
           +  IL     N  + L L  L  L +G  I TI    I   I  P +L+LG+  I   + 
Sbjct: 342 SDAILGF-TQNKWVFLALANLLILFVGCFIDTIAAITILVPILLPIVLKLGIDPIHFGLI 400

Query: 535 VFYFGILADLTPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALMLQG 594
           +    ++  L PP+ +  F  A +AR     +S     +A+  +++P M        + G
Sbjct: 401 MTLNLMIGLLHPPLGMVLFVLARVAR-----LSVERTTMAILPWLVPLMIALLAITYIPG 455

Query: 595 DNLWM 599
             LW+
Sbjct: 456 LTLWL 460