Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 620 a.a., Sialic acid TRAP transporter permease protein SiaT from Xanthobacter sp. DMC5

 Score = 68.9 bits (167), Expect = 7e-16
 Identities = 80/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 184 LFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQ 243
           LF+  G  +E  GM K    F   L GH  GG   V V +  L+  I+GS  A++     
Sbjct: 260 LFVFLGQLIEMTGMAKAMVAFLASLLGHVRGGLHYVLVGAMYLVSGISGSKAADMAAVAP 319

Query: 244 FTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPA 303
              P M + G K      + + +   ++ +PP    V   +     V    +    L+PA
Sbjct: 320 VLFPEMTKRGAKPGDLVALLSATGAQTETIPP--SIVLITIGSVTGVSIAALFTGGLLPA 377

Query: 304 CLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLF 363
            +   ++  +V    +  DL G+ K    ++WG V  ++ + +P   L +++ +      
Sbjct: 378 LVLAVALCSVVWWRYRDEDLSGVAK----ASWGEVGRAFIISVPAIALPFVIRAAVIEGV 433

Query: 364 SGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLVVA 423
           +    ++   IV    A +L    +  R  F + +    +       G +  +IG     
Sbjct: 434 ATATEVSTIGIVYSVVAGLLIYRRFDFRRLFPMLVDTAALS------GAILFIIGAATGM 487

Query: 424 CWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVAS------TFAGY 477
            W +  +  +     +AL +  R A+P G A  L  SI+A V L  V         F   
Sbjct: 488 AWALTQSGFS-----NALAEAMR-ALPGGSASFLAVSIVAFVVLGSVLEGIPAIVLFGPL 541

Query: 478 ILAIGRDNLLLSLILTMLTCLVLGMGIPTIP---NYIITSSIAAPALLELGVPLIVSHMF 534
           +  I +   +  +  +M+  L +GMG+   P    Y    +I+  +  + G+  IV +M 
Sbjct: 542 LFPIAKQVGVNEVHYSMVVILAMGMGLFAPPFGVGYYAACAISRIS-PDAGMKPIVGYMI 600

Query: 535 VFYFGIL 541
               G++
Sbjct: 601 ALLIGLI 607