Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 426 a.a., C4-dicarboxylate TRAP transporter large permease protein DctM from Xanthobacter sp. DMC5

 Score = 77.4 bits (189), Expect = 1e-18
 Identities = 78/329 (23%), Positives = 138/329 (41%), Gaps = 20/329 (6%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           FI  G  + + G+       A  L GH  GG  +V VV+S L G I+GS +A+    G  
Sbjct: 61  FIFAGDLMMRGGIADRLIGMAASLVGHLRGGLGQVNVVASTLFGGISGSAVADASAIGGI 120

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            IP M R GY   +A  V   S++ + ++PP    + + ++    +   ++  A ++P  
Sbjct: 121 MIPQMARHGYAKDYAVNVTVNSAIIALMIPPSHNMIIYSLSAGGTISIADLFTAGIMPGL 180

Query: 305 LYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSG-RTPLF 363
           L   ++    ++ A+    +G P    P  W AV  S    IP  +L+ ++F G R+ +F
Sbjct: 181 LLAAAMMITAYVVARN---RGYPAGTFP-GWHAVLRSVVAAIPGIMLIGIIFGGVRSGIF 236

Query: 364 SGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLVVA 423
           +      +  I        L V+    R   W       +G  R    +V  VIG     
Sbjct: 237 TATESSCIAVI------YALLVTTLVYREMHWADFVEATLGAVRT-TAMVLLVIGTAASF 289

Query: 424 CW---FMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVAS-TFAGYIL 479
            W   F+Q  + T+ +      +     + + I   ++G+ + +  +  + +  F   + 
Sbjct: 290 GWLMAFLQVPKATIEMMQAISSNPYVILLLINIILLILGTFMDMAPMIIICTPIFLPLVK 349

Query: 480 AIGRDNLLLSLILTMLTCLVLGMGIPTIP 508
           A G D +   +IL     L  G+G+ T P
Sbjct: 350 AFGIDPVHFGVIL----ILNAGIGLNTPP 374