Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 650 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 75.9 bits (185), Expect = 6e-18
 Identities = 105/398 (26%), Positives = 167/398 (41%), Gaps = 39/398 (9%)

Query: 129 PIICGLFLAYGLFGEYLPGDLAHRG--YGLDQII------NQLSFGTEGLYGTPTYVSAT 180
           PI+ G  + + L G  +   LA  G  +GL  I         L    E +YGT       
Sbjct: 49  PIMFGALVLFLLLGYPVAFSLAANGLIFGLIGIYLGLFEPKFLQALPERVYGTMNNEVLL 108

Query: 181 YIFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVT 240
            +  F   G  LE++GM +   D    +FG   GG A   +   AL+   TG   A+V++
Sbjct: 109 AVPFFTFMGLILERSGMAEDLLDTIGQVFGSIRGGLAYAVIFVGALLAATTGVVAASVIS 168

Query: 241 TGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAAL 300
            G  ++P+M R+GY    A GV A S   +QI+PP +  V  +MA+ +N    ++ + A 
Sbjct: 169 MGLISLPIMLRYGYDRRVASGVIAASGTLAQIIPPSL--VLIVMADQLNRSVGDMYEGAF 226

Query: 301 IP----ACLYFGSVFWMVH--------LEAKRSDLKGLPKDQCPS-AWGAVKDSWF-LLI 346
           +P    A LY   +F +          L  +   L+   +   PS   GAV  + F  LI
Sbjct: 227 VPGLLLASLYAVYIFIISSIFPNAAPGLPLEAQTLRDPEQKTLPSRIMGAVAAAGFAFLI 286

Query: 347 PLGVLVYLLFSGRTPLFSGMVGLALTAIVIL-----GSAIILKVSNY-ALRCAFWIALGL 400
             G L  L  +G  P  + M    + + V+L     G+A +L  S + AL  +   A+ L
Sbjct: 287 ARGSLPGLT-AGALPGVANMAVWGIGSFVVLFFIMSGTAKLLTPSLFIALALSIAGAIEL 345

Query: 401 LCVGFFRLGIGVVF----AVIGVLVVACWFMQGTRETLVICLHALVDGARHAVPVGIACA 456
           + +   + G   V     A +G+  V     +  R  L+  L   V       P+ +   
Sbjct: 346 MEMSHVKFGADYVVLTMSATVGIAFVVAVINRVFRLKLLSKLAEQVVFVM-VPPLALIFL 404

Query: 457 LVGSI---IAVVSLTGVASTFAGYILAIGRDNLLLSLI 491
           ++G+I   +A  +  G   +    ILA  R  L   L+
Sbjct: 405 VLGTIFIGVATPTEGGAMGSLGAVILAFARGRLKFDLL 442



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 53/243 (21%), Positives = 94/243 (38%), Gaps = 42/243 (17%)

Query: 84  ALYQWVFESDLIQRSGDLTTTDMIMGIVLVVLVFEAARRVMGIALPIICGLFLAYGLFGE 143
           A+   VF   L+ +  +     M+  + L+ LV       +G+A P   G   A G  G 
Sbjct: 373 AVINRVFRLKLLSKLAEQVVFVMVPPLALIFLVLGTI--FIGVATPTEGG---AMGSLGA 427

Query: 144 YLPGDLAH-RGYGLDQIINQLSFGTEGLYGTPTYVSATYIFLFILFGAFLEKAGMIKLFT 202
            +   LA  RG     ++ Q ++ T  L         +   LFIL GA        ++F+
Sbjct: 428 VI---LAFARGRLKFDLLRQATYSTAKL---------SAFVLFILLGA--------RVFS 467

Query: 203 DFAMGLFGHKL---------GGPAKVAVVSSALMGTITGSGIANVVTTGQFTIPLM---- 249
               G+ GHK          GG     +  +AL+  +  +   +        IPL+    
Sbjct: 468 LTFYGVDGHKWVEELLVSLPGGQTGFLIAVNALVFVL--AFFLDYFELAFIIIPLLGPAA 525

Query: 250 KRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPACLYFGS 309
            + G    + G + A +   S + PP   A+ F+ +    VP+V+     ++   +  G 
Sbjct: 526 DKMGIDLIWFGVMLAVNMQTSFMHPPFGFALFFLRSVAAKVPYVDRVTGKMMQP-VTTGQ 584

Query: 310 VFW 312
           ++W
Sbjct: 585 IYW 587