Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 426 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 81.6 bits (200), Expect = 7e-20
 Identities = 96/416 (23%), Positives = 166/416 (39%), Gaps = 58/416 (13%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           F+L GA + + GM +    FA  L G   GG + V +++S   G I+GS +A+  + G  
Sbjct: 61  FVLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSV 120

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            IP M+R GY   FA  V  + S+ + + PP   +V + +A   +V    +  A ++P  
Sbjct: 121 LIPEMERRGYPREFATAVTVSGSVQALLTPPSHNSVLYSLAAGGSVSIASLFMAGVVPGL 180

Query: 305 LYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLFS 364
           L    +  +  + AK+   +  PK +              +IPL                
Sbjct: 181 LMSACLMVLCLIFAKK---RNYPKGE--------------VIPL---------------- 207

Query: 365 GMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLVVAC 424
               L + A  + G              A  I LG +  G F        AV+    V  
Sbjct: 208 -KQALKICADALWG------------LMAMVIILGGILSGIFTATESAAIAVLWAFFVTM 254

Query: 425 WFMQGTR-ETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGR 483
           +  +  +   L   +H  V   R    V I  A   S   +++L  + +      L +  
Sbjct: 255 FIYRDYKWSELPKLMHRTV---RTISIVMILIAFAASFGYIMTLMQIPAKITTLFLTLS- 310

Query: 484 DNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGILAD 543
           DN  + L+      L+LG  +   P  +I + I  P +L +GV  +   M +     +  
Sbjct: 311 DNRYVILMCINAMLLLLGTVMDMAPLILILTPILLPVVLGIGVDPVHFGMIMLVNLGIGL 370

Query: 544 LTPPVALACFAAAPIARESGLK-----ISFWAV--RIALAGFVIPFMTVYNPALML 592
           +TPPV    F  A + + S  K     + F+ V   + +A   IP ++++ P+++L
Sbjct: 371 ITPPVGAVLFVGAAVGKVSIEKTVKALLPFYGVLFLVLMAVTYIPALSLWLPSVVL 426