Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 426 a.a., C4-dicarboxylate ABC transporter permease from Pseudomonas simiae WCS417

 Score = 69.7 bits (169), Expect = 3e-16
 Identities = 93/385 (24%), Positives = 166/385 (43%), Gaps = 27/385 (7%)

Query: 178 SATYIFL----FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGS 233
           S  Y FL    F+L GAF+   G+ +   DFA    GH  GG A  AV++  L   ++GS
Sbjct: 51  SDAYTFLAIPFFLLSGAFMTTGGVAQRLIDFANACVGHIRGGLAIAAVLACMLFAALSGS 110

Query: 234 GIANVVTTGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFV 293
             A V   G   +  M R GY  AF  G+   +     ++PP +  V +  A   +V   
Sbjct: 111 SPATVAAVGSIAVAGMVRSGYPKAFGAGIICNAGTLGILIPPSIVMVVYSAATETSVG-- 168

Query: 294 EIAKAALIPACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVY 353
           ++  A +IP  L    +   +++ A+   L   P+        + + +++ L+ L +++ 
Sbjct: 169 KLFMAGVIPGLLLGLMLMIAIYIVARIKKLPAQPRATFREWLTSARRAFWGLLLLVIILG 228

Query: 354 LLFSGR-TPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGV 412
            ++SG  TP  +  V    +A V L    I K  +  LR    +   LL  G  RL I +
Sbjct: 229 GIYSGMFTPTEAAAVAAVYSAFVAL---FIYK--DMQLRDCPKV---LLESG--RLAIML 278

Query: 413 VFAVIGVLVVA--CWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSII---AVVSL 467
           +F +   ++ A      Q  +E     L   +      + V +   + GS +   A+V +
Sbjct: 279 MFIIANAMLFAHVLTTEQIPQEITAWVLSEGLTPIGFLIMVNVVLLIAGSFMEPSAIVLI 338

Query: 468 TGVASTFAGYILAIGRDNLLLSLILTMLTCLVLGMGIPTIP-NYIITSSIAAPALLELGV 526
             +A  F    + +G D + L ++  M+  + +G+  P +  N  +TS++    L +   
Sbjct: 339 --LAPIFFPIAMKLGIDPIHLGIV--MVVNMEIGLVHPPVGLNLFVTSAVTGLTLGQTIR 394

Query: 527 PLIVSHMFVFYFGILADLTPPVALA 551
             +   M +  F I+    P ++LA
Sbjct: 395 AALPWLMILLVFLIMVTYLPFISLA 419