Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 425 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score = 69.3 bits (168), Expect = 3e-16
 Identities = 96/418 (22%), Positives = 167/418 (39%), Gaps = 80/418 (19%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           FIL G  +E  G+ +   +FA  + G   GG     V++  +   ++GS +A     G  
Sbjct: 60  FILAGNLMETGGISRRLVEFAKSIVGGVQGGLPMTCVLTCMIFAAVSGSSVATTFAIGAI 119

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            IP + + GY  ++A  ++ATS+    I+PP +  + + ++  +++   E+  A   P  
Sbjct: 120 LIPALIKHGYPTSYAAALQATSAELGVIIPPSIPMILYGVSAEVSIG--ELFIAGFGPGI 177

Query: 305 LYFGSVFWMVHLEAKRSDLKGLPKD----QCPSAWGAVKDSWFLLIPLGVLVYLLFSGRT 360
           L   ++   V +  K    KG  K+    + P      +  W LL+P+ +L         
Sbjct: 178 LISLALMLFVWVYCK---WKGWGKNDGEGRMPFGRALWQAGWALLMPVIIL--------- 225

Query: 361 PLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVL 420
               G+ G   T       A+      YAL                         V+G++
Sbjct: 226 ---GGIYGGVFTPTEASAVAVF-----YAL-------------------------VVGMV 252

Query: 421 VVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILA 480
           +         RE  +  L+ ++   R +V   ++ A++  IIA   L     T AG   A
Sbjct: 253 IY--------REIKLKDLYVIL---RKSV---MSSAVIMFIIANAGLFAFLITRAGVPDA 298

Query: 481 IGR--DNLLLSLILTML----TCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMF 534
           IG     +L S  + +L       V+GM I T    I+ + I AP  +  G+  +   + 
Sbjct: 299 IGHWLQQVLQSPAMFLLGVNAALFVIGMFIETSAAIIVLAPILAPVAVHFGIDPVHFGLI 358

Query: 535 VFYFGILADLTPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALML 592
           +     L  +TPP  +  FAA  +AR S  +I            ++PF+ V    LM+
Sbjct: 359 MVVNLALGMITPPFGVNLFAACTVARISLDRI---------VRHLVPFVLVIMACLMV 407