Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 432 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score = 62.8 bits (151), Expect = 3e-14
 Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 5/189 (2%)

Query: 184 LFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQ 243
           +F+L G+  +++G+     +FA+ + G   G    VA+  +  +G I+GSG AN    G 
Sbjct: 65  MFVLVGSIFDRSGVALRLVNFAIAIVGRGPGMLPLVAIAVAMFLGGISGSGPANAAAVGA 124

Query: 244 FTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAF-IMAETINVPFVEIAKAALIP 302
             I  M R GY AAF+  V   ++    ++PP +  + + ++    +VP   +  A ++P
Sbjct: 125 VMIAAMSRAGYPAAFSASVVGAAAATDILIPPSVAFIVYSVLVPGASVP--ALFAAGMVP 182

Query: 303 ACLYFGSVFWMVHLEAKRSDLKGLPKD-QCPSAWGAVKD-SWFLLIPLGVLVYLLFSGRT 360
             L   ++     L A++  +  L      P  W + ++ +W L  P+ +L  +     T
Sbjct: 183 GVLAGLALMIPAVLLARKHKMGALEATLPRPPFWKSFREATWGLAAPVLILGGMRAGWFT 242

Query: 361 PLFSGMVGL 369
           P  + +V +
Sbjct: 243 PTEAAVVAV 251