Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 450 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score = 72.8 bits (177), Expect = 3e-17
 Identities = 99/425 (23%), Positives = 161/425 (37%), Gaps = 70/425 (16%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           FI  G  +   G+      FA  L GH  GG     VV+S L G ++GS +A+    G  
Sbjct: 61  FIFSGELMLHGGIADKIVAFARSLVGHWKGGLGLANVVASTLFGGVSGSPVADTSAMGGV 120

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVE--IAKAALIP 302
            IP+MKR GY AA+A  V   +S+   +MP     + +  A    V  ++  I K   I 
Sbjct: 121 MIPIMKREGYSAAYAVNVTTHASLSGALMPTSHNMIIYAFAAQAAVGTIDGHIIKGVSIG 180

Query: 303 ACLYFG--SVFWMV-------------HLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIP 347
             ++ G   VFW++             H   KR+D  G    +    WG V  ++   IP
Sbjct: 181 DLMFAGLIPVFWIMVCMLVAAYWQAAKHGYPKRTD--GSTMLERFPGWGMVGKTFLAAIP 238

Query: 348 LGVLVYLLFSGRTPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFR 407
                                  L  IVI+   ++  V+      A  +   LL      
Sbjct: 239 ----------------------GLMVIVIILVCVMQGVATATEAAAIAVTYSLL------ 270

Query: 408 LGIGVVFAVIGVLVVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVG---SIIAV 464
                      + VVA  +   TRE L   L      A+ +   G+   L+G    +   
Sbjct: 271 -----------LTVVA--YRTMTREKLFKSL------AKASKTTGVILLLIGVSNMLRYQ 311

Query: 465 VSLTGVASTFAGYILAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLEL 524
           ++   +       +LA      L+ L + ++  + LG+ +    + +IT+ +  P  +++
Sbjct: 312 MAYLEIPDAIETVLLAATTSPWLMLLYINIIQ-IFLGIFLDMAAHILITTPLFLPLAIQM 370

Query: 525 GVPLIVSHMFVFYFGILADLTPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMT 584
           GV  +   M +     L  + PPV    F    I + S  + +  A    LA F+   + 
Sbjct: 371 GVGPVQFGMMLLLNCALGLVHPPVGTVQFIGCAIGKISIGEATKTAWPYYLAIFIAITLV 430

Query: 585 VYNPA 589
            Y PA
Sbjct: 431 TYVPA 435