Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 433 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3 from Variovorax sp. SCN45

 Score = 63.2 bits (152), Expect = 2e-14
 Identities = 96/403 (23%), Positives = 155/403 (38%), Gaps = 66/403 (16%)

Query: 184 LFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQ 243
           +F+L GA +  +G+ +     A  + GH  GG     VV+      I GS +A   T   
Sbjct: 67  MFMLMGALVSVSGVSRELFKAANSMIGHLRGGLGVATVVACGGFAAICGSSVATAATFSA 126

Query: 244 FTIPLMKRFGYKAAFAGGVEATSSMGSQIMPP--VMGAVAFIMAETINVPFVEIAKAALI 301
              P M+RF Y  +F+ GV A       I+PP  V+   A +  + I   F+      ++
Sbjct: 127 VAYPEMRRFNYPQSFSTGVIAAGGTLGAILPPSTVLAVYAILTQQDIGKLFMAGIVPGIL 186

Query: 302 PACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYL---LFSG 358
              +Y  ++  +V L   R D   LP  +       VKD   +  PL + V++   L+ G
Sbjct: 187 AMAMYVMTIAIIVKL---RPD--WLPGGEIKPWSERVKDLKNVWAPLVLFVFVIGGLYGG 241

Query: 359 -RTPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVI 417
             TP  +G  G+  +   ILG  +  K+    +R A   A         R    V   +I
Sbjct: 242 FFTPTEAG--GVGASGAFILG-LVRRKLDGPKIREALLSAT--------RTAAAVFTVLI 290

Query: 418 GVLVVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGY 477
           G L+   +F+  T+                  P  +   L G                  
Sbjct: 291 GALLFG-YFLTITQS-----------------PQKLTEFLTG------------------ 314

Query: 478 ILAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFY 537
            L IGR  +   L L ML  LVLG  +  +   I+T  I  P ++ LG   I   + +  
Sbjct: 315 -LGIGRYGV---LALIMLMYLVLGCLMDAMAMIILTVPIIYPVIVHLGFDPIWFGVIIVM 370

Query: 538 FGILADLTPPVALACFAAAPIARESGLKISFWAVRIALAGFVI 580
              L  + PPV +  F    + ++    +SF  +   +  F++
Sbjct: 371 TVELGLIHPPVGMNVFVIKSVVKD----VSFTTIFKGVLPFIV 409