Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score = 99.0 bits (245), Expect = 4e-25
 Identities = 95/413 (23%), Positives = 173/413 (41%), Gaps = 63/413 (15%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           F+L G  +   G+ K   D A+ L GH  GG   V +++  L+  ++GS +A+       
Sbjct: 62  FMLAGEIMNVGGLSKRIVDLALALVGHVKGGLGYVTIMAGCLLSALSGSAVADAAALTAL 121

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            +P+M + G+  A AGG+ A + +   ++PP +G V F +A   NV   ++  AA++P  
Sbjct: 122 LLPMMVKAGHDKARAGGLIAATGIIGPVIPPSIGLVIFGVA--ANVSISKLFMAAIVPGL 179

Query: 305 LYFGSVF----WMVHLEAKRSDLKGLPKDQCPSAWGAVKDS-WFLLIPLGVLVYLLFSGR 359
           L  G+++    W+V    +   ++  P+        A +D+ W LL+P+ +LV L     
Sbjct: 180 LIGGALWVTWAWLV----RHEKIQPPPRKPAREVMKAARDAGWALLLPVIILVGLRMGVF 235

Query: 360 TPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGV 419
           TP          T   ++ +     V+ +  R   + AL  + V   +    V+F +I  
Sbjct: 236 TP----------TEAAVVAAVYAFFVATFIYRELSFDALYKVFVSAAKTSAVVMF-LIAA 284

Query: 420 LVVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYIL 479
            +V+ W                           I  A + S      + G+   F G   
Sbjct: 285 AMVSAWL--------------------------ITVADLPS-----KVVGLLEPFMG--- 310

Query: 480 AIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGV-PLIVSHMFVFYF 538
                N +L +I+ ML  + +G  +   P  +I + +  P ++  G+ P+    MF+   
Sbjct: 311 -----NKILLMIMVMLLVMAVGTAMDMTPTILILTPVLMPVVIAAGIDPVYFGVMFIINN 365

Query: 539 GILADLTPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALM 591
            I   +TPPV +     A + +     ++   +    A F I F+ V  P L+
Sbjct: 366 SI-GLITPPVGVVLNVVAGVGKMKMDDVTRGVLPFMAAEFAIMFVMVIFPQLV 417