Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 629 a.a., Predicted gluconate TRAP family transporter, DctM subunit from Variovorax sp. SCN45

 Score = 61.2 bits (147), Expect = 1e-13
 Identities = 66/282 (23%), Positives = 111/282 (39%), Gaps = 15/282 (5%)

Query: 184 LFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQ 243
           LFI  GA +E  GM +    F   L GH  GG + V + +  L+  I+GS IA++     
Sbjct: 267 LFIFLGALIEMTGMARAMIQFLASLLGHVRGGLSYVLIGAMYLVSGISGSKIADMAAIAP 326

Query: 244 FTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPA 303
              P M + G K      + + +   ++ +PP    V   +     V    +    L+PA
Sbjct: 327 VLFPEMTKRGAKPGDLVALLSATGAQTETIPP--SIVLITIGSVTGVSIAALFTGGLLPA 384

Query: 304 CLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLF 363
            +   ++  +V    +R DL G+ +      +   +    LL+ L   V L F  R  + 
Sbjct: 385 VVLGAALCAVVWWRYRREDLSGVQR------YSKREIGKLLLVALPA-VLLPFVIRAAVV 437

Query: 364 SGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLVVA 423
            G+     T +  +G      V     R   W  L  + V    L   ++F ++G     
Sbjct: 438 EGVA--TATEVSTIGIVYAAVVGLVVYRQFDWRRLKPMLVDTASLSGAIIF-IVGCATAM 494

Query: 424 CWFM--QGTRETLVICLHALVDGARHAVPVGIACALV-GSII 462
            W +   G  + L   +  L  GA   + V I   +V GS++
Sbjct: 495 AWGLTQSGFSQDLARVMGTLPGGAYGFLAVSIVAFIVLGSVL 536