Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 632 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score = 63.5 bits (153), Expect = 3e-14
 Identities = 94/409 (22%), Positives = 164/409 (40%), Gaps = 65/409 (15%)

Query: 157 DQIINQLSFGTEGLYGTPTYVSATYIFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGP 216
           D  +  L +  + + GT  YV     F F+L G  +E  GM     +  + +FG   GG 
Sbjct: 240 DPSLPMLVYSQQVMAGTDHYVLLAIPF-FVLAGLLMEANGMSSRLIELLLRMFGRLRGGL 298

Query: 217 AKVAVVSSALMGTITGSGIANVVTTGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPV 276
             + + ++A    ++GS +A++   G   +P +++         G+ A +++ ++ +PP 
Sbjct: 299 GLITITATAFFSGVSGSKLADIAAVGGIIMPAVRKTKQDPNETAGLLACTAVMAETIPPC 358

Query: 277 MGAVAFIMAETINVPFVEIAKAALIPACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWG 336
           +  +  IM    N+    +  A L+PA      V   V L A                  
Sbjct: 359 INMI--IMGFVANISIAGLFMAGLVPA------VVLAVSLAA------------------ 392

Query: 337 AVKDSWFLLIPLGVLVY--LLFSGRTPLFSGMVGLALTAIVILGSAIILKVSNYALRCAF 394
                  + I +G  +     F  RTP+F  ++G AL A+V++  A+I K     +  + 
Sbjct: 393 -------VTIYVGTKINPDEAFDVRTPMFR-LLGGALVALVMV--AMIGKGVTSGVATST 442

Query: 395 WIALGLLCVGFFRLGIGVVFAVIGVLVVACWFMQGTRETLVICLHAL-VDGARHAVPVGI 453
            ++                FAVI  LVV  W     RE  V  +  L V  A  A  +  
Sbjct: 443 EVS---------------SFAVIYALVVG-WL--AFRELTVKSVARLFVRSASMAGGILF 484

Query: 454 ACALVGSIIAVVSLTGVASTFAGYILAIGRD-NLLLSLILTMLTCLVLGMGIPTIPNYII 512
             A   S+   +++  +    + +++         + ++L++L  +V G  +   P  II
Sbjct: 485 IVAAASSLSFALTIQQIPQYLSEFMIGFAHSYGSTMFVMLSVLIMIVFGAILEGAPALII 544

Query: 513 TSSIAAPALLELGV-PLIVSHMFVFY--FGILADLTPPVALACFAAAPI 558
              +  P   +LGV PL    + V    FG+ A   PPV L  FA   I
Sbjct: 545 FGPLLTPIASQLGVNPLHFGTVMVIAMGFGLFA---PPVGLGLFATCAI 590