Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 675 a.a., permease from Pseudomonas putida KT2440

 Score = 1030 bits (2663), Expect = 0.0
 Identities = 510/675 (75%), Positives = 581/675 (86%)

Query: 1   MSEDQHGIATDPRDWPKTLFYVALLFSIFQIVTAAFSPVSSIVLRAVHVGFLLWVVFLSY 60
           MS+   G+      WP  LF VAL+FS+FQI TAAF  +S+ VLRA+HVGFLL VV+LSY
Sbjct: 1   MSDTAQGLHASTDRWPAALFAVALVFSVFQIATAAFPLISTQVLRAIHVGFLLLVVYLSY 60

Query: 61  PAHGRQRPWQPLAWVLSLGGVATALYQWVFESDLIQRSGDLTTTDMIMGIVLVVLVFEAA 120
              G +RPWQPLAW+L L G+ATA YQW FE DLIQRSG+LTT+D+I+G++L+ LVFEAA
Sbjct: 61  SFVGHRRPWQPLAWLLGLAGMATAAYQWYFEGDLIQRSGELTTSDLIVGLLLIGLVFEAA 120

Query: 121 RRVMGIALPIICGLFLAYGLFGEYLPGDLAHRGYGLDQIINQLSFGTEGLYGTPTYVSAT 180
           RRVMGIALPIIC LFLAYGL G++LPG+LAHRGYGLDQI+NQL+FGTEGLYGTPTYVSAT
Sbjct: 121 RRVMGIALPIICALFLAYGLLGQHLPGELAHRGYGLDQIVNQLAFGTEGLYGTPTYVSAT 180

Query: 181 YIFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVT 240
           YI+LFILFGAFLE+AGMI+LFTDFAMGLFGH+ GGPAKV+V SSALMGTITGSG+ANVVT
Sbjct: 181 YIYLFILFGAFLEQAGMIRLFTDFAMGLFGHRSGGPAKVSVFSSALMGTITGSGVANVVT 240

Query: 241 TGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAAL 300
           TGQFTIPLMKRFGYK AFAGGVEATSSMGSQ+MPPVMGAVAFIMAETINVP+ E+AKAAL
Sbjct: 241 TGQFTIPLMKRFGYKPAFAGGVEATSSMGSQLMPPVMGAVAFIMAETINVPYAEVAKAAL 300

Query: 301 IPACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRT 360
           IPA LYFGSV+WMVHLEA+RS L GLP++QCPSAW A++  WFLL+PL VLV LLFSGRT
Sbjct: 301 IPALLYFGSVYWMVHLEARRSHLHGLPREQCPSAWDALRQRWFLLVPLMVLVALLFSGRT 360

Query: 361 PLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVL 420
           PL+SGMVGLALTAIVILGSAIIL+     LR AFW+ALG+LC GFFR+GIGV+  VI  L
Sbjct: 361 PLYSGMVGLALTAIVILGSAIILRAQKTWLRAAFWVALGILCSGFFRMGIGVILMVIAGL 420

Query: 421 VVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILA 480
            +AC F+QG R TL  C+ AL +GARHAVPVGIACALVG II V+SLTG+A+TFAGYIL 
Sbjct: 421 AIACCFVQGGRATLHACVMALAEGARHAVPVGIACALVGVIIGVISLTGLATTFAGYILD 480

Query: 481 IGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGI 540
           +GRDNL LSL+LTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGI
Sbjct: 481 LGRDNLFLSLVLTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGI 540

Query: 541 LADLTPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALMLQGDNLWMT 600
           LADLTPPVALACFAAAPIA+E GL ISFWAVRIALAGFV+PFM VY+PALM+QGD++  T
Sbjct: 541 LADLTPPVALACFAAAPIAKEKGLLISFWAVRIALAGFVVPFMAVYDPALMMQGDSMGST 600

Query: 601 AYMLIKTLLAVGLWGMASTGYLQQKMPIWERLLCFAAGALLVVALPVTDEIGFVLGGLLI 660
            YM+IK   AV LWG AS G+L+  MP WERLL FAAG  L++A P++DE+GF LG  ++
Sbjct: 601 LYMVIKAAFAVALWGCASIGHLRAPMPWWERLLAFAAGVSLILAAPISDEVGFALGAAVL 660

Query: 661 LQHVWRARRSGRALA 675
             H WR R +   LA
Sbjct: 661 GWHYWRTRPASGHLA 675