Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 426 a.a., D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) from Pseudomonas putida KT2440

 Score = 79.3 bits (194), Expect = 3e-19
 Identities = 97/421 (23%), Positives = 164/421 (38%), Gaps = 56/421 (13%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           F+L GA + + GM +    FA  L G   GG + V +++S   G I+GS +A+  + G  
Sbjct: 61  FVLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSV 120

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            IP M+R GY   F+  V  + S+ + + PP   +V + +A    V    +  A ++P  
Sbjct: 121 LIPEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGIMPGL 180

Query: 305 LYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLFS 364
           L    +  +  + AK+   +  PK +              +IPL                
Sbjct: 181 LLSAVMMGLCLIFAKK---RNYPKGE--------------VIPL---------------- 207

Query: 365 GMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLVVAC 424
                   A+ I G A+      + L  A  I LG +  G F        AV+    V  
Sbjct: 208 ------REALKIAGEAL------WGL-MAMVIILGGILSGVFTATESAAVAVVWSFFVTM 254

Query: 425 WFMQGTR-ETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGR 483
           +  +  +   L   +H  V   R    V I      S   V++L  + S      L +  
Sbjct: 255 FIYRDYKWRDLPKLMHRTV---RTISIVMILIGFAASFGYVMTLMQIPSKITTAFLTLS- 310

Query: 484 DNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGILAD 543
           DN  + L+      ++LG  +   P  +I + I  P +  +GV  +   M +     +  
Sbjct: 311 DNRYVILMCINFMLMLLGTVMDMAPLILILTPILLPVITGIGVDPVHFGMIMLVNLGIGL 370

Query: 544 LTPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALMLQGDNLWMTAYM 603
           +TPPV    F  + I + S        +   LA F++     Y PA+     +LW+ + +
Sbjct: 371 ITPPVGAVLFVGSAIGKVSIESTVKALMPFYLALFLVLMAVTYIPAI-----SLWLPSVV 425

Query: 604 L 604
           L
Sbjct: 426 L 426