Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 860 a.a., TRAP-type uncharacterized transport system, fused permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  334 bits (857), Expect = 9e-96
 Identities = 224/692 (32%), Positives = 358/692 (51%), Gaps = 81/692 (11%)

Query: 19  LFYVALLFSIFQIVTAAFSP-------VSSIVLRAVHVGFLLWVVFLSYPAHGRQ-RPWQ 70
           +F V LL+++FQ   A+  P       ++    RA+H+ F L++ FL++PA  R  R   
Sbjct: 34  VFSVCLLWALFQYWYASPLPFELGIGILNDTEARAIHLAFALFLAFLAWPAFKRSPRHRV 93

Query: 71  PLA-WVLSLGGVATALYQWVFESDLIQRSGDLTTTDMIMGIVLVVLVFEAARRVMGIALP 129
           P+  W+L+        Y  +F +DL  R G     D+ +G   VVL+ EA RR +G  + 
Sbjct: 94  PVIDWLLAGVAAFCGAYIMLFYADLATRPGQPNGLDIAVGFAGVVLLLEATRRAVGWPMA 153

Query: 130 IICGLFLAYGLFGEYLPGDLAHRGYGLDQIINQLSFGTEGLYGTPTYVSATYIFLFILFG 189
            +  +FLAY L G +LP  L+H+G  ++++I+ +   TEG+YG    VSA  IF+++LFG
Sbjct: 154 ALAVVFLAYCLLGPHLPEVLSHKGASVNRLISHMWLTTEGVYGIALGVSAGTIFVYVLFG 213

Query: 190 AFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQFTIPLM 249
           A L++AG        +    GH  GGPAKVAVVSSAL G I+GS ++NVV+ G FTIPLM
Sbjct: 214 ALLDRAGGGNYMMQVSFAALGHLRGGPAKVAVVSSALNGMISGSSVSNVVSGGIFTIPLM 273

Query: 250 KRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPACLYFGS 309
           K+ GY    AG +E  SS+  QIMPPVMGA AF+M E + +P+ +I K A +PA L +  
Sbjct: 274 KKAGYGGVKAGAIETMSSVNGQIMPPVMGAAAFLMVEYVGIPYADIVKHAFLPATLSYIG 333

Query: 310 VFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSW---FLLIPLGVL--------VYLLFSG 358
           + ++VHLEA +  ++ + +        AV   W    L   +G+         VY L  G
Sbjct: 334 LLYIVHLEALKLGMQPIVQ--------AVARPWRVRLLRNAIGIAGSIAVVCSVYYLLQG 385

Query: 359 RTPLFSGMVGLALTAIVILGSAIILKVSNYA--------------------------LRC 392
              +   +   A +A+V+     +  V   A                          L  
Sbjct: 386 IKAVMGPVAPYAASAVVL--GLYLFSVYQAAGCPDLPDDIDIDHPRPLQTWPTVRAGLHY 443

Query: 393 AFWIALGLLCV----------GFFRLGIGVVFAVIGVLVVACWFMQGTRETLVICLHALV 442
              IA+ + C+           F+ + + +V  +    ++A +       T +    ++V
Sbjct: 444 LMPIAVLIWCLMVEEMSPALSAFWAVTVLIVLMLTQRPLIALFRRTSGAGTWLQGWRSVV 503

Query: 443 D----GARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGRDNLLLSLILTMLTCL 498
           D    G+R+ + +G+A A  G I+  ++LTG+      ++  + + N+++ L+     CL
Sbjct: 504 DGFNDGSRNMIGIGVATATAGIIVGAITLTGLGLRMTEFVEFVAQGNVMMMLLFIAFVCL 563

Query: 499 VLGMGIPTIPNYIITSSIAAPALLELG------VPLIVSHMFVFYFGILADLTPPVALAC 552
           VLG+G+PT  NY++ +++ AP ++ELG      +PL+  H+FVFY+GI+ D+TPPV LA 
Sbjct: 564 VLGLGVPTTANYVLVATLMAPVVVELGAQSGLIIPLVAVHLFVFYYGIMGDITPPVGLAT 623

Query: 553 FAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALMLQGDNLWMT---AYMLIKTLL 609
           FAAA I+ E  ++        AL   ++PF+ ++NP L+L   N+  T     +L+   L
Sbjct: 624 FAAAAISGEDAIQTGVQGAIYALRTVILPFIWIFNPQLLL--INVHSTPELIRLLLACTL 681

Query: 610 AVGLWGMASTGYLQQKMPIWERLLCFAAGALL 641
           A  L+  A+  + + K   WE +L   A  LL
Sbjct: 682 ATLLFAAATMNWFRVKSRWWETVLLLLAVLLL 713