Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 425 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 85.1 bits (209), Expect = 6e-21
 Identities = 86/413 (20%), Positives = 157/413 (38%), Gaps = 61/413 (14%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           F+L G  +   G+ +   DFA+   GH  GG   VA+ ++ +M  I+GS  A+       
Sbjct: 62  FMLAGELMNAGGISRRIVDFALAWIGHIRGGLGIVAIAAAVIMAAISGSAAADAAALTAM 121

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            IP+M++ GY  A +GG+ A  S+ + ++PP +  + F      NV   ++  AA++P  
Sbjct: 122 LIPMMRKAGYDVARSGGLIAAGSVIAPVLPPSIALIVF--GVIANVSIGKLFMAAIVPGL 179

Query: 305 L----YFGSVFWMVHLEAKRSDLKGLPKDQCPSAWG-AVKDSWFLLIPLGVLVYLLFSGR 359
           L       +  W+   E  R      P+   P       + +W L++P+G++  +     
Sbjct: 180 LMGVALVATWLWISRKEPGRMQ----PRTPMPERLRITARATWALIMPIGIVGGMKLGVF 235

Query: 360 TPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGV 419
           TP          T   ++ +     V  +  R   W  L  L +   +    VVF +I  
Sbjct: 236 TP----------TEAAVVAAVYAFIVGMFVYRELTWRMLYPLLLSSAKASAAVVF-LIAT 284

Query: 420 LVVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYIL 479
            +V+ W                                   +I V  +    S     ++
Sbjct: 285 ALVSAW-----------------------------------LITVSEIPQQVSDMLQPLI 309

Query: 480 AIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFG 539
           A    N  L +   M   +V+G  +   P  +I + I  P + E G+  +   +      
Sbjct: 310 A----NPTLLMFAMMALVIVVGTALDFSPTLLILTPILMPIVREAGIDPVYFGVLFVMNN 365

Query: 540 ILADLTPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALML 592
            +  +TPPV +        AR    ++        +A   + F+ V  P+++L
Sbjct: 366 AIGLITPPVGIVLNVVCSGARLQMGQLMKGLWPFLIAEVAVLFLLVIFPSIVL 418