Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 486 a.a., C4-dicarboxylate ABC transporter from Magnetospirillum magneticum AMB-1

 Score = 73.6 bits (179), Expect = 2e-17
 Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 17/260 (6%)

Query: 168 EGLYGTPTYVSATYIFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALM 227
           E ++G     +   I  F   G  LE++GM +   D    LFG   GG A   +   AL+
Sbjct: 58  ERIFGIMRNDTLLAIPFFTFMGLILERSGMAEDLLDTIGQLFGPIRGGLAYAVIFVGALL 117

Query: 228 GTITGSGIANVVTTGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAET 287
              TG   A+V++ G  ++P+M R+GY    A GV A S   +QI+PP +  V  IMA+ 
Sbjct: 118 AATTGVVAASVISMGLISLPIMLRYGYDRRVASGVIAASGTLAQIIPPSL--VLIIMADQ 175

Query: 288 INVPFVEIAKAALIPAC----LYFGSVFWMVHLEAKRSDLKGLPKD-QCPSAWGAVKDSW 342
           +     ++   A IP      LY G +F +  +  + S    LP + +     G +  + 
Sbjct: 176 LGRSVGDMYAGAFIPGFVLTGLYAGFIFLVTMI--RPSFAPALPPEARSLRGMGLLLRTV 233

Query: 343 FLLIPLGVLVYL----LFSG-RTPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIA 397
             L+P  +L++L    +F G  TP   G +G A   I+ L   +  K+    +R A    
Sbjct: 234 TCLVPPLILIFLVLGTIFIGVATPTEGGAMGAAGAMILAL---MKRKLDWNLMRQAMDTT 290

Query: 398 LGLLCVGFFRLGIGVVFAVI 417
             L C   F L    VF ++
Sbjct: 291 AKLSCFVVFILVGSTVFGLV 310