Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 427 a.a., C4-dicarboxylate ABC transporter permease from Magnetospirillum magneticum AMB-1

 Score = 75.9 bits (185), Expect = 4e-18
 Identities = 98/423 (23%), Positives = 179/423 (42%), Gaps = 81/423 (19%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           FIL G FL   G+ +   +FA  + GH  GG     V++ AL   ++GS  A VV  G  
Sbjct: 62  FILAGNFLTHGGVARRMINFATAMVGHWYGGLGLAGVMACALFAAVSGSSPATVVAIGSI 121

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            +P M + G+   F  GV  TS     ++PP +  V + +A   +V    +  A +IP  
Sbjct: 122 ILPAMVKQGFPNKFGAGVITTSGALGILIPPSLVMVMYAVATNTSVG--ALFMAGVIPGL 179

Query: 305 L---YFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTP 361
           +     G+V W +   A ++D   LP       + A +++ + L  + +++  +++G   
Sbjct: 180 VLATVLGAVTWYI---AWKNDYPRLPPATWAQRFRAFREAIWGLALIVIVIGGIYTG--- 233

Query: 362 LFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLV 421
           +F+     A++A+             YA   A ++   +   G            +G ++
Sbjct: 234 VFTPTEAAAMSAV-------------YAFLIAVFVYKDMPLKG------------VGKIL 268

Query: 422 VACWFMQGTRETLVICLHALVDG---ARHAVPVGIACALVGSIIAVVSLTGVASTFAGYI 478
           ++   M      L I  +A++     A   +P  IA  +VG  + V++          ++
Sbjct: 269 LSSASMSAM--LLYIITNAVLFSFVLANENIPHAIADWIVGKELGVIA----------FL 316

Query: 479 LAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYF 538
           L +   N+LL         LV G  +      +I + I  P  ++LG+  I       +F
Sbjct: 317 LVV---NVLL---------LVAGNFMEPSSIVLIMAPILFPVAMKLGIDPI-------HF 357

Query: 539 GILADLT-------PPVALACFAAAPIARE--SGLKISFWAVRIALAGFVIPFMTVYNPA 589
           GIL  +        PPV L  + A+ I +   + L ++ W   +A+ GF++  +  Y P 
Sbjct: 358 GILIVVNMEVGMCHPPVGLNLYVASGITKMGITELTVAVWPWLLAMLGFLM--VVTYWPP 415

Query: 590 LML 592
           L +
Sbjct: 416 LSI 418