Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 432 a.a., C4-dicarboxylate TRAP transporter large permease protein DctM from Azospirillum sp. SherDot2

 Score = 71.2 bits (173), Expect = 9e-17
 Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 6/202 (2%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           FIL G FL   G+ +   +FA  + GH  GG     V++ AL   ++GS  A VV  G  
Sbjct: 62  FILAGNFLTHGGVARRMINFATSMVGHWHGGLGLAGVMACALFAAVSGSSPATVVAIGSI 121

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAK---AALI 301
            +P M   G+   F  G+  TS     ++PP +  V + +A T +     I +   A ++
Sbjct: 122 ILPAMVAQGFPKNFGAGIVTTSGALGILIPPSIVMVMYCVATTGHPQAASIGQMFIAGVV 181

Query: 302 PACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTP 361
           P  L    + +     A++     LPK        A+++S++ L+ + V++  ++SG   
Sbjct: 182 PGILLACFLGFTTWFRARKFGYPRLPKASFAQRMHALRESFWGLLLIIVVMGGIYSG--- 238

Query: 362 LFSGMVGLALTAIVILGSAIIL 383
           +F+     A+ A+     A+ +
Sbjct: 239 IFTPTEAAAMAAVYAFVVAVFV 260