Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 431 a.a., Neu5Ac permease from Alteromonas macleodii MIT1002

 Score = 90.5 bits (223), Expect = 1e-22
 Identities = 103/410 (25%), Positives = 167/410 (40%), Gaps = 66/410 (16%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           F+L G  + + G+ K   + AM L G   GG A V VVS  L G I+GS +A     G F
Sbjct: 66  FVLSGLIMGRGGIAKRLIECAMALIGALPGGLALVNVVSCMLFGAISGSAVATTSAIGSF 125

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            +P MK+ GY+  F+  V A +S    ++PP    + + +A    V    +  A  IP  
Sbjct: 126 MLPEMKKAGYEPNFSAAVTAAASTTGMLIPPSNILIVYAIASG-GVSIAALFMAGYIPGI 184

Query: 305 LYFGSVFWMVHLEAKRSDLKGLP-KDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLF 363
           +   ++  +  + AK   +KG P   + P     V +     +P   L++L       + 
Sbjct: 185 MVGLALMLVCFIYAK---MKGYPLSPRLPIK--VVVEKTIAALPSLFLIFL-------VI 232

Query: 364 SGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLVVA 423
            G+VG   TA      A++     Y+L         LL V F++         +    + 
Sbjct: 233 GGIVGGVFTATEAGAIAVV-----YSL---------LLAVVFYK--------EVDAKALP 270

Query: 424 CWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGR 483
             F++    T ++ L                 A   ++  ++S   +  T +  +L+I  
Sbjct: 271 DIFLKAAETTAIVML---------------LIAASTAMSWLLSFENIPQTLSNALLSIS- 314

Query: 484 DNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGILAD 543
           DN LL L+L  L  +V+G  +   P  +I + I  P  LELG       M    FGI+  
Sbjct: 315 DNPLLILLLINLLLIVVGAFLDMTPAVLIFTPIFLPVALELG-------MSELQFGIMLV 367

Query: 544 L-------TPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMTVY 586
           L       +PPV    F    IA+     I    + + +A FV+  +  Y
Sbjct: 368 LNLSIGLCSPPVGAVLFITCAIAKTKLENIIRPLIPLYVAMFVVLMLVTY 417