Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score = 79.0 bits (193), Expect = 6e-19
 Identities = 114/524 (21%), Positives = 203/524 (38%), Gaps = 98/524 (18%)

Query: 73  AWVLSLGGVATA-----------LYQWV------------FESDLIQRSGDLTTTDMIMG 109
           A +L+LGGV  A           L +WV            F    +QR  +  T  +++ 
Sbjct: 114 ALILALGGVEIAAMLGGTSPTLGLPEWVRFGFLGAGGALIFVYLTLQRFSEGKTFAVLLS 173

Query: 110 IVLVVLVFEAARRVMGIALPIICGLFLAY-GLFGEYLPGDLAHRGYGLDQIINQLSFGTE 168
           + + ++ +    ++  +   +   LFLA     G  L   LAH       +   ++FG+ 
Sbjct: 174 MTIALVAYVGLPQIF-VDTTLPPSLFLALTAAVGLVLAAPLAHAFLAAAYVA--IAFGST 230

Query: 169 GLYGTPTYVSATY----------IFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAK 218
                P  VS+T           I  F+L G+ L  +G+      FA  + GH+  G A+
Sbjct: 231 --LPEPAIVSSTVTGMSKFLLLAIPFFLLAGSLLTISGVANQLVRFAASVVGHRRAGLAQ 288

Query: 219 VAVVSSALMGTITGSGIANVVTTGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMG 278
             +++S L    +GS +AN         P + + GY  A AG + A +S+   ++PP   
Sbjct: 289 TTLLTSVLFSGASGSSVANAAFGASTFQPELVKHGYPPAQAGAIIAATSVLDNVIPP--- 345

Query: 279 AVAF-IMAETINVPFVEIAKAALIPACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGA 337
           ++AF I+A   N+    +         L    +   +HL  +         D  P A GA
Sbjct: 346 SIAFLILATATNLSVGSLLVGGFFAGGLMAVCLGVAIHLSVR-------SVDTLPRATGA 398

Query: 338 VKDSWFLLIPLGVLVYLLFSGRTPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIA 397
             + W   I                 + +    L  IV++G  I +  +  A   A   A
Sbjct: 399 --ERWRSAI-----------------AAIPAFGLGVIVVVGIRIGIVTTTEAAALA---A 436

Query: 398 LGLLCVGF-FRLGIGVVFAVIGVLVVACWFMQGTRETLVICLHALVDGARHAVPVGIACA 456
           L  L +GF +RLG+G +FA          F Q   E               A  +G+   
Sbjct: 437 LYTLLLGFGYRLGVGRIFAT---------FRQSAGE---------------AAAIGLLIG 472

Query: 457 LVGSIIAVVSLTGVASTFAGYILAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSI 516
             G    ++++  V+     ++  +G   + + L+L+ L  L +G+ +      ++   I
Sbjct: 473 TAGPFAFLLAVDNVSGLVTDFVTVLGGSKITV-LLLSNLILLAVGLVLDIGAAILLFGPI 531

Query: 517 AAPALLELGVPLIVSHMFVFYFGILADLTPPVALACFAAAPIAR 560
             PA +  G+  I   + +    ++  LTPP+ +  F  + + R
Sbjct: 532 LLPAAVAAGIDPIHFGVILVVNLMIHGLTPPLGMLIFVVSGVTR 575