Pairwise Alignments

Query, 859 a.a., DNA mismatch repair protein MutS from Pseudomonas fluorescens FW300-N2E2

Subject, 928 a.a., DNA mismatch repair protein MutS from Xanthobacter sp. DMC5

 Score =  565 bits (1456), Expect = e-165
 Identities = 367/893 (41%), Positives = 506/893 (56%), Gaps = 60/893 (6%)

Query: 12  TPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGMAIPMCG 71
           TPMM QY  +K  +PD L+FYRMGDFYE+F+ DA++A++ L I LT RG+  G  IPMCG
Sbjct: 42  TPMMAQYMEIKAANPDSLLFYRMGDFYELFFADAEQASQALGIVLTKRGKHLGEDIPMCG 101

Query: 72  IPYHAAEGYLAKLVKLGESVVICEQVGDPATSK-----GPVERQVVRIITPGTVSDEALL 126
           +P   AE YL KL+ LG  V +CEQ+ DPA +K       V R V R++TPGT+++++LL
Sbjct: 102 VPIDRAEEYLHKLIALGFRVAVCEQLEDPAEAKKRGGKSVVRRDVTRLVTPGTITEDSLL 161

Query: 127 DERRDNLIAAVL-------GDERLFGLAVLDITSGNFSVLEIKGWENLLAELERVNPVEL 179
           D RR+N++AA+         D+  + +A  D+++G F V        L  +L RV+P EL
Sbjct: 162 DARRENVLAALARVRAGSGADDFAYAIAFTDMSTGAFRVAGTTR-AALSGDLARVDPAEL 220

Query: 180 LIPDDWPKDLPAEKRRGVRRRAP-------WDFERDSALKSLCQQFSTQDLKGFGCENLT 232
           L+ D    D    + R + R  P         F+   A K L   +    L  FG     
Sbjct: 221 LVSDALLDDA---ELRAMLRDLPAVTPLPRQSFDGAGAEKRLADFYGVAALDAFGAFARA 277

Query: 233 LAIGAAGCLLAYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTL 292
             I AA  ++AY   TQ  A P L     E     + +D  +R NLEL    +G R  +L
Sbjct: 278 ELIAAAA-VVAYVDRTQLGAKPLLARPVREAEGGIMAIDAGTRANLELVRTTSGDRRGSL 336

Query: 293 QSVVDRCQTAMGSRLLTRWLNRPLRDLTVLLARQSSITCLLDRYRFEQ-LQPQLKEIGDI 351
            + VDR  TA G+RLL R +  PL DL  + AR   +  L +     + L+  L    D+
Sbjct: 337 LAAVDRTVTAAGARLLARRIAEPLTDLAAIRARHDGVGHLCEDGALRRALREALARAPDM 396

Query: 352 ERILARIGLRNARPRDLARLRDAL-GALPELQVAMTGLEAPH-LQQLARTTSTYPELAAL 409
            R + R+ L+   PRDLA +RD L GAL      + G +AP  L + AR  S  P   AL
Sbjct: 397 ARAVTRLALQRGGPRDLAAVRDGLDGALAI--AGLIGPDAPDDLSRAARALSRAPHAVAL 454

Query: 410 -LEKAIIDNPPAVIRDGGVLKTGYDAELDELQALSENAGQFLIDLEAREKARTGLANLKV 468
            L  A+ +N P   RDGG ++ G D ELD  +AL + + + +  LE R    TG+ +LK+
Sbjct: 455 DLASALAENLPVHRRDGGFVREGCDPELDATRALRDESRRVVAALERRYVEETGVRSLKI 514

Query: 469 GYNRIHGYFIELPSKQAE---QAPAD--YVRRQTLKGAERFITPELKAFEDKALSAKSRA 523
            +N + GY++E+  + A+   + P D  +V RQT+ GA RF + EL   E +  SA  RA
Sbjct: 515 RHNAVLGYYVEVTQQNADRLREPPHDAVFVHRQTMAGAMRFSSVELGDLESRIASAGERA 574

Query: 524 LAREKMLYEALLEDLISQLPPLQDTAGALAELDVLSNLAERALNLDLNCPRFVSEPCMRI 583
           LA E+ ++E L   ++++   ++  A ALAELDV S LAE A       P         I
Sbjct: 575 LALEQAIFERLSAAVVAETDAIRVAADALAELDVASGLAELAATEAHVRPHMEEGVAFAI 634

Query: 584 SQGRHPVVEQVLTT---PFVANDLSL-----DDNTRMLVITGPNMGGKSTYMRQTALIVL 635
             GRHPVVEQ L     PFV ND  L     D + R++++TGPNM GKST++RQ ALI +
Sbjct: 635 VGGRHPVVEQALARDGGPFVPNDCDLSPPEGDKDGRIVLVTGPNMAGKSTFLRQNALIAV 694

Query: 636 LAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLM 695
           LA  G+FVPA S  + +VDR+F+R+G++DDLA GRSTFMVEM ETA IL+ AT RSLV++
Sbjct: 695 LAQAGAFVPARSARIGVVDRLFSRVGAADDLARGRSTFMVEMVETAAILNQATPRSLVIL 754

Query: 696 DEVGRGTSTFDGLSLAWAAAERLAHL-RAYTLFATHYFELTVLPESQPLVANVHLNATEH 754
           DE+GRGT+TFDG+S+AWA+ E L  + R   LFATH+ ELT L +    ++N  +  TE 
Sbjct: 755 DEIGRGTATFDGMSIAWASLEHLHEVNRCRALFATHFHELTALSQRCRRLSNATVKVTEW 814

Query: 755 NERIVFLHHVLPGPASQSYGLAVAQLAGVPSEVITRAREHLSRLETT-----------SL 803
           +  ++FLH V+PG A +SYG+ VA+LAG+P  VI RA+  L+ LE              L
Sbjct: 815 HGDVIFLHEVVPGAADRSYGIQVAKLAGLPEAVIARAKAVLAELEAAERASPAQKLIDDL 874

Query: 804 PHEAPRPTKGKPTAPQQSDLFASLPHPVLDELAKLDLDDLTPRRALDLLYTLK 856
           P  A RP   +  A  Q+D  A     V+  L  LD D L+PR ALD LY LK
Sbjct: 875 PLFAVRPKPAEKAA--QADPAAD---AVIGALDDLDPDALSPREALDALYRLK 922